gnu: Add imp.

* gnu/packages/bioinformatics.scm (imp): New variable.
This commit is contained in:
Ricardo Wurmus 2017-04-13 22:56:54 +02:00
parent 282b01515b
commit aa163424b2
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 48 additions and 0 deletions

View File

@ -85,6 +85,7 @@
#:use-module (gnu packages ruby) #:use-module (gnu packages ruby)
#:use-module (gnu packages serialization) #:use-module (gnu packages serialization)
#:use-module (gnu packages statistics) #:use-module (gnu packages statistics)
#:use-module (gnu packages swig)
#:use-module (gnu packages tbb) #:use-module (gnu packages tbb)
#:use-module (gnu packages tex) #:use-module (gnu packages tex)
#:use-module (gnu packages texinfo) #:use-module (gnu packages texinfo)
@ -9426,3 +9427,50 @@ exon-skipping scanner detection scheme.")
(description "PHYLIP (the PHYLogeny Inference Package) is a package of (description "PHYLIP (the PHYLogeny Inference Package) is a package of
programs for inferring phylogenies (evolutionary trees).") programs for inferring phylogenies (evolutionary trees).")
(license license:bsd-2))) (license license:bsd-2)))
(define-public imp
(package
(name "imp")
(version "2.6.2")
(source
(origin
(method url-fetch)
(uri (string-append "https://integrativemodeling.org/"
version "/download/imp-" version ".tar.gz"))
(sha256
(base32
"0lxqx7vh79d771svr611dkilp6sn30qrbw8zvscbrm37v38d2j6h"))))
(build-system cmake-build-system)
(arguments
`(;; FIXME: Some tests fail because they produce warnings, others fail
;; because the PYTHONPATH does not include the modeller's directory.
#:tests? #f
;; Do not place libraries in an architecture-specific directory.
#:configure-flags
(list "-DCMAKE_INSTALL_LIBDIR=lib")))
(inputs
`(("boost" ,boost)
("gsl" ,gsl)
("swig" ,swig)
("hdf5" ,hdf5)
("fftw" ,fftw)
("python" ,python-2)))
(propagated-inputs
`(("python2-numpy" ,python2-numpy)
("python2-scipy" ,python2-scipy)
("python2-pandas" ,python2-pandas)
("python2-scikit-learn" ,python2-scikit-learn)
("python2-networkx" ,python2-networkx)))
(home-page "https://integrativemodeling.org")
(synopsis "Integrative modeling platform")
(description "IMP's broad goal is to contribute to a comprehensive
structural characterization of biomolecules ranging in size and complexity
from small peptides to large macromolecular assemblies, by integrating data
from diverse biochemical and biophysical experiments. IMP provides a C++ and
Python toolbox for solving complex modeling problems, and a number of
applications for tackling some common problems in a user-friendly way.")
;; IMP is largely available under the GNU Lesser GPL; see the file
;; COPYING.LGPL for the full text of this license. Some IMP modules are
;; available under the GNU GPL (see the file COPYING.GPL).
(license (list license:lgpl2.1+
license:gpl3+))))