gnu: Add r-bsgenome-hsapiens-1000genomes-hs37d5.
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5): New variable.
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@ -6885,6 +6885,37 @@ dependencies between GO terms can be implemented and applied.")
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genome data packages and support for efficient SNP representation.")
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(license license:artistic2.0)))
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(define-public r-bsgenome-hsapiens-1000genomes-hs37d5
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(package
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(name "r-bsgenome-hsapiens-1000genomes-hs37d5")
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(version "0.99.1")
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(source (origin
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(method url-fetch)
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;; We cannot use bioconductor-uri here because this tarball is
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;; located under "data/annotation/" instead of "bioc/".
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(uri (string-append "http://www.bioconductor.org/packages/"
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"release/data/annotation/src/contrib/"
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"BSgenome.Hsapiens.1000genomes.hs37d5_"
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version ".tar.gz"))
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(sha256
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(base32
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"1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr"))))
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(properties
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`((upstream-name . "BSgenome.Hsapiens.1000genomes.hs37d5")))
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(build-system r-build-system)
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;; As this package provides little more than a very large data file it
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;; doesn't make sense to build substitutes.
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(arguments `(#:substitutable? #f))
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(propagated-inputs
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`(("r-bsgenome" ,r-bsgenome)))
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(home-page
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"http://www.bioconductor.org/packages/BSgenome.Hsapiens.1000genomes.hs37d5/")
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(synopsis "Full genome sequences for Homo sapiens")
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(description
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"This package provides full genome sequences for Homo sapiens from
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1000genomes phase2 reference genome sequence (hs37d5), based on NCBI GRCh37.")
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(license license:artistic2.0)))
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(define-public r-impute
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(package
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(name "r-impute")
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