gnu: Add taxtastic.

* gnu/packages/bioinformatics.scm (taxtastic): New variable.
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Ben Woodcroft 2017-02-04 15:23:45 +10:00
parent de59e24abe
commit ad0ae297d4
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@ -5268,6 +5268,42 @@ between experiments, StringTie's output can be processed either by the
Cuffdiff or Ballgown programs.") Cuffdiff or Ballgown programs.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public taxtastic
(package
(name "taxtastic")
(version "0.5.7")
;; Versions after 0.5.4 do not appear to be distributed on PyPI so we
;; download the package from GitHub.
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/fhcrc/taxtastic/archive/v"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1s0h5y1lds1c40jhir5585ffm6yjyn8h5aqimpgv64rhqhfv56xx"))))
(build-system python-build-system)
(arguments
`(#:python ,python-2
#:phases
(modify-phases %standard-phases
(replace 'check
(lambda _
(zero? (system* "python" "-m" "unittest" "discover" "-v")))))))
(propagated-inputs
`(("python-sqlalchemy" ,python2-sqlalchemy)
("python-decorator" ,python2-decorator)
("python-biopython" ,python2-biopython)
("python-pandas" ,python2-pandas)))
(home-page "https://github.com/fhcrc/taxtastic")
(synopsis "Tools for taxonomic naming and annotation")
(description
"Taxtastic is software written in python used to build and maintain
reference packages i.e. collections of reference trees, reference alignments,
profiles, and associated taxonomic information.")
(license license:gpl3+)))
(define-public vcftools (define-public vcftools
(package (package
(name "vcftools") (name "vcftools")