gnu: Add taxtastic.
* gnu/packages/bioinformatics.scm (taxtastic): New variable.
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@ -5268,6 +5268,42 @@ between experiments, StringTie's output can be processed either by the
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Cuffdiff or Ballgown programs.")
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(license license:artistic2.0)))
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(define-public taxtastic
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(package
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(name "taxtastic")
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(version "0.5.7")
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;; Versions after 0.5.4 do not appear to be distributed on PyPI so we
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;; download the package from GitHub.
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(source (origin
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(method url-fetch)
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(uri (string-append
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"https://github.com/fhcrc/taxtastic/archive/v"
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version ".tar.gz"))
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(file-name (string-append name "-" version ".tar.gz"))
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(sha256
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(base32
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"1s0h5y1lds1c40jhir5585ffm6yjyn8h5aqimpgv64rhqhfv56xx"))))
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(build-system python-build-system)
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(arguments
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`(#:python ,python-2
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#:phases
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(modify-phases %standard-phases
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(replace 'check
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(lambda _
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(zero? (system* "python" "-m" "unittest" "discover" "-v")))))))
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(propagated-inputs
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`(("python-sqlalchemy" ,python2-sqlalchemy)
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("python-decorator" ,python2-decorator)
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("python-biopython" ,python2-biopython)
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("python-pandas" ,python2-pandas)))
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(home-page "https://github.com/fhcrc/taxtastic")
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(synopsis "Tools for taxonomic naming and annotation")
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(description
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"Taxtastic is software written in python used to build and maintain
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reference packages i.e. collections of reference trees, reference alignments,
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profiles, and associated taxonomic information.")
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(license license:gpl3+)))
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(define-public vcftools
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(package
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(name "vcftools")
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