gnu: Add python2-bx-python.
* gnu/packages/bioinformatics.scm (python2-bx-python): New variable.
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@ -285,6 +285,41 @@ and more accurate. BWA-MEM also has better performance than BWA-backtrack for
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70-100bp Illumina reads.")
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70-100bp Illumina reads.")
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(license license:gpl3+)))
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(license license:gpl3+)))
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(define-public python2-bx-python
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(package
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(name "python2-bx-python")
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(version "0.7.2")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"https://pypi.python.org/packages/source/b/bx-python/bx-python-"
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version ".tar.gz"))
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(sha256
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(base32
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"0ld49idhc5zjdvbhvjq1a2qmpjj7h5v58rqr25dzmfq7g34b50xh"))
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(modules '((guix build utils)))
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(snippet
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'(substitute* "setup.py"
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;; remove dependency on outdated "distribute" module
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(("^from distribute_setup import use_setuptools") "")
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(("^use_setuptools\\(\\)") "")))))
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(build-system python-build-system)
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(arguments
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`(#:tests? #f ;tests fail because test data are not included
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#:python ,python-2))
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(inputs
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`(("python-numpy" ,python2-numpy)
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("zlib" ,zlib)))
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(native-inputs
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`(("python-nose" ,python2-nose)
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("python-setuptools" ,python2-setuptools)))
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(home-page "http://bitbucket.org/james_taylor/bx-python/")
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(synopsis "Tools for manipulating biological data")
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(description
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"bx-python provides tools for manipulating biological data, particularly
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multiple sequence alignments.")
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(license license:expat)))
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(define-public clipper
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(define-public clipper
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(package
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(package
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(name "clipper")
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(name "clipper")
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