gnu: Add prodigal.

* gnu/packages/bioinformatics.scm (prodigal): New variable.
This commit is contained in:
Ben Woodcroft 2015-06-27 22:28:19 +10:00 committed by Mark H Weaver
parent 151714ca8c
commit af86047537
1 changed files with 31 additions and 0 deletions

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@ -1600,6 +1600,37 @@ the phenotype as it models the data.")
generated using the PacBio Iso-Seq protocol.")
(license license:bsd-3))))
(define-public prodigal
(package
(name "prodigal")
(version "2.6.2")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/hyattpd/Prodigal/archive/v"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0m8sb0fg6lmxrlpzna0am6svbnlmd3dckrhgzxxgb3gxr5fyj284"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ;no check target
#:make-flags (list (string-append "INSTALLDIR="
(assoc-ref %outputs "out")
"/bin"))
#:phases
(modify-phases %standard-phases
(delete 'configure))))
(home-page "http://prodigal.ornl.gov")
(synopsis "Protein-coding gene prediction for Archaea and Bacteria")
(description
"Prodigal runs smoothly on finished genomes, draft genomes, and
metagenomes, providing gene predictions in GFF3, Genbank, or Sequin table
format. It runs quickly, in an unsupervised fashion, handles gaps, handles
partial genes, and identifies translation initiation sites.")
(license license:gpl3+)))
(define-public rsem
(package
(name "rsem")