gnu: Add r-monocle3.
* gnu/packages/bioconductor.scm (r-monocle3): New variable.
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@ -22,6 +22,7 @@
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module (guix packages)
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#:use-module (guix packages)
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#:use-module (guix download)
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#:use-module (guix download)
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#:use-module (guix git-download)
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#:use-module (guix build-system r)
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#:use-module (guix build-system r)
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#:use-module (gnu packages)
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#:use-module (gnu packages)
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#:use-module (gnu packages base)
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#:use-module (gnu packages base)
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@ -2263,6 +2264,68 @@ tasks on single cell expression data. It is designed to work with RNA-Seq and
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qPCR data, but could be used with other types as well.")
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qPCR data, but could be used with other types as well.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-monocle3
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(package
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(name "r-monocle3")
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(version "0.1.2")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/cole-trapnell-lab/monocle3.git")
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(commit version)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1cjxqfw3qvy269hsf5v80d4kshl932wrl949iayas02saj6f70ls"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-delayedmatrixstats" ,r-delayedmatrixstats)
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("r-dplyr" ,r-dplyr)
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("r-ggplot2" ,r-ggplot2)
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("r-ggrepel" ,r-ggrepel)
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("r-grr" ,r-grr)
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("r-htmlwidgets" ,r-htmlwidgets)
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("r-igraph" ,r-igraph)
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("r-irlba" ,r-irlba)
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("r-limma" ,r-limma)
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("r-lmtest" ,r-lmtest)
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("r-mass" ,r-mass)
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("r-matrix" ,r-matrix)
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("r-matrix-utils" ,r-matrix-utils)
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("r-pbapply" ,r-pbapply)
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("r-pbmcapply" ,r-pbmcapply)
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("r-pheatmap" ,r-pheatmap)
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("r-plotly" ,r-plotly)
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("r-pryr" ,r-pryr)
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("r-proxy" ,r-proxy)
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("r-pscl" ,r-pscl)
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("r-purrr" ,r-purrr)
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("r-rann" ,r-rann)
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("r-rcpp" ,r-rcpp)
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("r-rcppparallel" ,r-rcppparallel)
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("r-reshape2" ,r-reshape2)
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("r-reticulate" ,r-reticulate)
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("r-rhpcblasctl" ,r-rhpcblasctl)
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("r-rtsne" ,r-rtsne)
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("r-shiny" ,r-shiny)
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("r-slam" ,r-slam)
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("r-spdep" ,r-spdep)
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("r-speedglm" ,r-speedglm)
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("r-stringr" ,r-stringr)
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("r-singlecellexperiment" ,r-singlecellexperiment)
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("r-tibble" ,r-tibble)
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("r-tidyr" ,r-tidyr)
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("r-uwot" ,r-uwot)
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("r-viridis" ,r-viridis)))
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(home-page "https://github.com/cole-trapnell-lab/monocle3")
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(synopsis "Analysis toolkit for single-cell RNA-Seq data")
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(description
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"Monocle 3 is an analysis toolkit for single-cell RNA-Seq experiments.")
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(license license:expat)))
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(define-public r-noiseq
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(define-public r-noiseq
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(package
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(package
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(name "r-noiseq")
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(name "r-noiseq")
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