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gnu: python-scanpy: Add python-louvain to inputs. 

* gnu/packages/bioinformatics.scm (python-scanpy)[propagated-inputs]: Sort
inputs and add python-louvain.
[arguments]: Do not delete test that depends on louvain.
This commit is contained in:
Ricardo Wurmus 2019-04-02 15:10:51 +02:00
parent 6ee48091a4
commit b4a33870f6
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GPG Key ID: 197A5888235FACAC
1 changed files with 6 additions and 8 deletions
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@ -13301,9 +13301,6 @@ in RNA-seq data.")
(delete-file-recursively "scanpy/tests/notebooks") (delete-file-recursively "scanpy/tests/notebooks")
(delete-file "scanpy/tests/test_clustering.py") (delete-file "scanpy/tests/test_clustering.py")
;; TODO: No module named 'louvain'
(delete-file "scanpy/tests/test_rank_genes_groups_logreg.py")
;; TODO: I can't get the plotting tests to work, even with Xvfb. ;; TODO: I can't get the plotting tests to work, even with Xvfb.
(delete-file "scanpy/tests/test_plotting.py") (delete-file "scanpy/tests/test_plotting.py")
(delete-file "scanpy/tests/test_preprocessing.py") (delete-file "scanpy/tests/test_preprocessing.py")
@ -13316,18 +13313,19 @@ in RNA-seq data.")
#t))))) #t)))))
(propagated-inputs (propagated-inputs
`(("python-anndata" ,python-anndata) `(("python-anndata" ,python-anndata)
("python-h5py" ,python-h5py)
("python-igraph" ,python-igraph) ("python-igraph" ,python-igraph)
("python-numba" ,python-numba)
("python-joblib" ,python-joblib) ("python-joblib" ,python-joblib)
("python-louvain" ,python-louvain)
("python-matplotlib" ,python-matplotlib)
("python-natsort" ,python-natsort) ("python-natsort" ,python-natsort)
("python-networkx" ,python-networkx) ("python-networkx" ,python-networkx)
("python-statsmodels" ,python-statsmodels) ("python-numba" ,python-numba)
("python-scikit-learn" ,python-scikit-learn)
("python-matplotlib" ,python-matplotlib)
("python-pandas" ,python-pandas) ("python-pandas" ,python-pandas)
("python-scikit-learn" ,python-scikit-learn)
("python-scipy" ,python-scipy) ("python-scipy" ,python-scipy)
("python-seaborn" ,python-seaborn) ("python-seaborn" ,python-seaborn)
("python-h5py" ,python-h5py) ("python-statsmodels" ,python-statsmodels)
("python-tables" ,python-tables))) ("python-tables" ,python-tables)))
(native-inputs (native-inputs
`(("python-pytest" ,python-pytest))) `(("python-pytest" ,python-pytest)))