gnu: Add r-inspect.

* gnu/packages/bioconductor.scm (r-inspect): New variable.
master
Ricardo Wurmus 2018-08-16 16:48:39 +02:00 committed by Ricardo Wurmus
parent cea4d360d4
commit b64ce4b725
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@ -28,6 +28,7 @@
#:use-module (gnu packages cran)
#:use-module (gnu packages compression)
#:use-module (gnu packages graph)
#:use-module (gnu packages maths)
#:use-module (gnu packages statistics)
#:use-module (gnu packages web))
@ -802,3 +803,39 @@ information.")
@dfn{Reproducibility-Optimized Test Statistic} (ROTS) for differential testing
in omics data.")
(license license:gpl2+)))
(define-public r-inspect
(package
(name "r-inspect")
(version "1.10.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "INSPEcT" version))
(sha256
(base32
"1gk0pwyimkswrvgb2xr3c2zy4myi448a2shr5ap65rq9pcpp0l8p"))))
(properties `((upstream-name . "INSPEcT")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-desolve" ,r-desolve)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-preprocesscore" ,r-preprocesscore)
("r-proc" ,r-proc)
("r-rootsolve" ,r-rootsolve)
("r-rsamtools" ,r-rsamtools)
("r-s4vectors" ,r-s4vectors)))
(home-page "https://bioconductor.org/packages/INSPEcT")
(synopsis "Analysis of 4sU-seq and RNA-seq time-course data")
(description
"INSPEcT (INference of Synthesis, Processing and dEgradation rates in
Time-Course experiments) analyses 4sU-seq and RNA-seq time-course data in
order to evaluate synthesis, processing and degradation rates and assess via
modeling the rates that determines changes in mature mRNA levels.")
(license license:gpl2)))