gnu: Add r-centipede.
* gnu/packages/bioinformatics.scm (r-centipede): New variable.
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@ -5159,6 +5159,30 @@ sequence.")
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(supported-systems '("i686-linux" "x86_64-linux"))
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(supported-systems '("i686-linux" "x86_64-linux"))
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(license license:bsd-3)))
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(license license:bsd-3)))
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(define-public r-centipede
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(package
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(name "r-centipede")
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(version "1.2")
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(source (origin
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(method url-fetch)
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(uri (string-append "http://download.r-forge.r-project.org/"
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"src/contrib/CENTIPEDE_" version ".tar.gz"))
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(sha256
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(base32
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"1hsx6qgwr0i67fhy9257zj7s0ppncph2hjgbia5nn6nfmj0ax6l9"))))
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(build-system r-build-system)
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(home-page "http://centipede.uchicago.edu/")
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(synopsis "Predict transcription factor binding sites")
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(description
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"CENTIPEDE applies a hierarchical Bayesian mixture model to infer regions
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of the genome that are bound by particular transcription factors. It starts
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by identifying a set of candidate binding sites, and then aims to classify the
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sites according to whether each site is bound or not bound by a transcription
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factor. CENTIPEDE is an unsupervised learning algorithm that discriminates
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between two different types of motif instances using as much relevant
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information as possible.")
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(license (list license:gpl2+ license:gpl3+))))
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(define-public r-vegan
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(define-public r-vegan
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(package
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(package
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(name "r-vegan")
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(name "r-vegan")
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