gnu: Add r-centipede.

* gnu/packages/bioinformatics.scm (r-centipede): New variable.
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Ricardo Wurmus 2017-01-16 23:14:13 +01:00
parent 1fdfbadff0
commit b91cfa22e1
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@ -5159,6 +5159,30 @@ sequence.")
(supported-systems '("i686-linux" "x86_64-linux")) (supported-systems '("i686-linux" "x86_64-linux"))
(license license:bsd-3))) (license license:bsd-3)))
(define-public r-centipede
(package
(name "r-centipede")
(version "1.2")
(source (origin
(method url-fetch)
(uri (string-append "http://download.r-forge.r-project.org/"
"src/contrib/CENTIPEDE_" version ".tar.gz"))
(sha256
(base32
"1hsx6qgwr0i67fhy9257zj7s0ppncph2hjgbia5nn6nfmj0ax6l9"))))
(build-system r-build-system)
(home-page "http://centipede.uchicago.edu/")
(synopsis "Predict transcription factor binding sites")
(description
"CENTIPEDE applies a hierarchical Bayesian mixture model to infer regions
of the genome that are bound by particular transcription factors. It starts
by identifying a set of candidate binding sites, and then aims to classify the
sites according to whether each site is bound or not bound by a transcription
factor. CENTIPEDE is an unsupervised learning algorithm that discriminates
between two different types of motif instances using as much relevant
information as possible.")
(license (list license:gpl2+ license:gpl3+))))
(define-public r-vegan (define-public r-vegan
(package (package
(name "r-vegan") (name "r-vegan")