gnu: Add kaiju.

* gnu/packages/bioinformatics.scm (kaiju): New variable.
This commit is contained in:
Roel Janssen 2017-06-02 12:38:23 +02:00
parent 99c63f3f07
commit b9a601d9db
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1 changed files with 38 additions and 0 deletions

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@ -3214,6 +3214,44 @@ data.")
(supported-systems '("x86_64-linux"))
(license license:bsd-3)))
(define-public kaiju
(package
(name "kaiju")
(version "1.5.0")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/bioinformatics-centre/kaiju/archive/v"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0afbfalfw9y39bkwnqjrh9bghs118ws1pzj5h8l0nblgn3mbjdks"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; There are no tests.
#:phases
(modify-phases %standard-phases
(delete 'configure)
(add-before 'build 'move-to-src-dir
(lambda _ (chdir "src") #t))
(replace 'install
(lambda* (#:key inputs outputs #:allow-other-keys)
(let ((bin (string-append (assoc-ref outputs "out") "/bin")))
(mkdir-p bin)
(chdir "..")
(copy-recursively "bin" bin)
(copy-recursively "util" bin))
#t)))))
(inputs
`(("perl" ,perl)))
(home-page "http://kaiju.binf.ku.dk/")
(synopsis "Fast and sensitive taxonomic classification for metagenomics")
(description "Kaiju is a program for sensitive taxonomic classification
of high-throughput sequencing reads from metagenomic whole genome sequencing
experiments.")
(license license:gpl3+)))
(define-public macs
(package
(name "macs")