From bc2076f053d66b8293db800710bc72a7f5617396 Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Thu, 18 Jul 2019 23:29:07 +0200 Subject: [PATCH] gnu: bpp: Use the default GCC. * gnu/packages/bioinformatics.scm (bpp-core, bpp-phyl, bpp-popgen, bpp-seq, bppsuite)[inputs]: Remove GCC-5. --- gnu/packages/bioinformatics.scm | 17 ++++------------- 1 file changed, 4 insertions(+), 13 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index bfac90ecf7..e25a4e1d60 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1109,9 +1109,6 @@ relying on a complex dependency tree.") (build-system cmake-build-system) (arguments `(#:parallel-build? #f)) - (inputs - `(("gcc" ,gcc-5))) ; Compilation of bpp-phyl fails with GCC 4.9 so we - ; compile all of the bpp packages with GCC 5. (home-page "http://biopp.univ-montp2.fr") (synopsis "C++ libraries for Bioinformatics") (description @@ -1147,10 +1144,7 @@ providing them a set of re-usable tools.") #:out-of-source? #f)) (inputs `(("bpp-core" ,bpp-core) - ("bpp-seq" ,bpp-seq) - ;; GCC 4.8 fails due to an 'internal compiler error', so we use a more - ;; modern GCC. - ("gcc" ,gcc-5))) + ("bpp-seq" ,bpp-seq))) (home-page "http://biopp.univ-montp2.fr") (synopsis "Bio++ phylogenetic Library") (description @@ -1182,8 +1176,7 @@ library provides phylogenetics-related modules.") #:tests? #f)) ; There are no tests. (inputs `(("bpp-core" ,bpp-core) - ("bpp-seq" ,bpp-seq) - ("gcc" ,gcc-5))) + ("bpp-seq" ,bpp-seq))) (home-page "http://biopp.univ-montp2.fr") (synopsis "Bio++ population genetics library") (description @@ -1216,8 +1209,7 @@ library provides population genetics-related modules.") ;; so the tests fail. #:out-of-source? #f)) (inputs - `(("bpp-core" ,bpp-core) - ("gcc" ,gcc-5))) ; Use GCC 5 as per 'bpp-core'. + `(("bpp-core" ,bpp-core))) (home-page "http://biopp.univ-montp2.fr") (synopsis "Bio++ sequence library") (description @@ -1255,8 +1247,7 @@ library provides sequence-related modules.") `(("bpp-core" ,bpp-core) ("bpp-seq" ,bpp-seq) ("bpp-phyl" ,bpp-phyl) - ("bpp-phyl" ,bpp-popgen) - ("gcc" ,gcc-5))) + ("bpp-phyl" ,bpp-popgen))) (home-page "http://biopp.univ-montp2.fr") (synopsis "Bioinformatics tools written with the Bio++ libraries") (description