gnu: Remove r-loomr.
The loomR package is actually non-free software according to its author. See https://github.com/mojaveazure/loomR/pull/24. * gnu/packages/bioinformatics.scm (r-loomr): Remove variable.
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@ -13086,35 +13086,6 @@ known and yet unknown splice junctions. Circular-to-linear ratios of circRNAs
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can be calculated, and a number of descriptive plots easily generated.")
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(license license:artistic2.0)))
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(define-public r-loomr
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(let ((commit "df0144bd2bbceca6fadef9edc1bbc5ca672d4739")
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(revision "1"))
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(package
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(name "r-loomr")
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(version (git-version "0.2.0" revision commit))
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/mojaveazure/loomR.git")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1b1g4dlmfdyhn56bz1mkh9ymirri43wiz7rjhs7py3y7bdw1s3yr"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-r6" ,r-r6)
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("r-hdf5r" ,r-hdf5r)
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("r-iterators" ,r-iterators)
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("r-itertools" ,r-itertools)
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("r-matrix" ,r-matrix)))
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(home-page "https://github.com/mojaveazure/loomR")
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(synopsis "R interface for loom files")
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(description "This package provides an R interface to access, create,
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and modify loom files. loomR aims to be completely compatible with loompy.")
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(license license:gpl3))))
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(define-public gffread
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;; We cannot use the tagged release because it is not in sync with gclib.
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;; See https://github.com/gpertea/gffread/issues/26
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