gnu: bamm: Use htslib-1.3.

* gnu/packages/bioinformatics (htslib-1.3): New variable.
(bamm)[inputs]: Replace htslib with htslib-1.3.
This commit is contained in:
Ben Woodcroft 2017-06-26 21:07:10 +10:00
parent 98593f9f51
commit bca2c57658
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1 changed files with 15 additions and 1 deletions

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@ -248,7 +248,7 @@ structure of the predicted RNA.")
("python-nose" ,python2-nose)
("python-pysam" ,python2-pysam)))
(inputs
`(("htslib" ,htslib)
`(("htslib" ,htslib-1.3) ; At least one test fails on htslib-1.4+.
("samtools" ,samtools)
("bwa" ,bwa)
("grep" ,grep)
@ -3079,6 +3079,20 @@ data. It also provides the bgzip, htsfile, and tabix utilities.")
;; the rest is released under the Expat license
(license (list license:expat license:bsd-3))))
;; This package should be removed once no packages rely upon it.
(define htslib-1.3
(package
(inherit htslib)
(version "1.3.1")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/samtools/htslib/releases/download/"
version "/htslib-" version ".tar.bz2"))
(sha256
(base32
"1rja282fwdc25ql6izkhdyh8ppw8x2fs0w0js78zgkmqjlikmma9"))))))
(define-public idr
(package
(name "idr")