gnu: bamm: Use htslib-1.3.
* gnu/packages/bioinformatics (htslib-1.3): New variable. (bamm)[inputs]: Replace htslib with htslib-1.3.
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@ -248,7 +248,7 @@ structure of the predicted RNA.")
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("python-nose" ,python2-nose)
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("python-pysam" ,python2-pysam)))
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(inputs
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`(("htslib" ,htslib)
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`(("htslib" ,htslib-1.3) ; At least one test fails on htslib-1.4+.
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("samtools" ,samtools)
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("bwa" ,bwa)
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("grep" ,grep)
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@ -3079,6 +3079,20 @@ data. It also provides the bgzip, htsfile, and tabix utilities.")
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;; the rest is released under the Expat license
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(license (list license:expat license:bsd-3))))
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;; This package should be removed once no packages rely upon it.
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(define htslib-1.3
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(package
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(inherit htslib)
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(version "1.3.1")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"https://github.com/samtools/htslib/releases/download/"
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version "/htslib-" version ".tar.bz2"))
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(sha256
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(base32
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"1rja282fwdc25ql6izkhdyh8ppw8x2fs0w0js78zgkmqjlikmma9"))))))
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(define-public idr
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(package
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(name "idr")
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