gnu: Add r-gkmsvm.

* gnu/packages/bioinformatics.scm (r-gkmsvm): New variable.
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Ricardo Wurmus 2016-11-24 15:42:22 +01:00
parent 419a8a186f
commit bd3be46e7f
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@ -7643,6 +7643,39 @@ bound and non bound genomic regions to accurately identify transcription
factors bound at the specific regions.") factors bound at the specific regions.")
(license license:gpl2+))) (license license:gpl2+)))
(define-public r-gkmsvm
(package
(name "r-gkmsvm")
(version "0.71.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "gkmSVM" version))
(sha256
(base32
"1zpxgxmf2nd5j5wn00ps6kfxr8wxh7d1swr1rr4spq7sj5z5z0k0"))))
(properties `((upstream-name . "gkmSVM")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-kernlab" ,r-kernlab)
("r-rcpp" ,r-rcpp)
("r-rocr" ,r-rocr)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-seqinr" ,r-seqinr)))
(home-page "http://cran.r-project.org/web/packages/gkmSVM")
(synopsis "Gapped-kmer support vector machine")
(description
"This R package provides tools for training gapped-kmer SVM classifiers
for DNA and protein sequences. This package supports several sequence
kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.")
(license license:gpl2+)))
(define-public emboss (define-public emboss
(package (package
(name "emboss") (name "emboss")