From bfb93b4889a2352f47df56dedf0a10cd2dfc441c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:13:38 +0100 Subject: [PATCH] gnu: r-geneplotter: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-geneplotter): Move from here... * gnu/packages/bioconductor.scm (r-geneplotter): ...to here. --- gnu/packages/bioconductor.scm | 27 ++++++++++++++++++++++++++- gnu/packages/bioinformatics.scm | 25 ------------------------- 2 files changed, 26 insertions(+), 26 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index bbfe68c5cc..f3ea87cdb1 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2016, 2017, 2018, 2019 Ricardo Wurmus ;;; Copyright © 2016, 2017, 2018 Roel Janssen -;;; Copyright © 2018 Tobias Geerinckx-Rice +;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice ;;; ;;; This file is part of GNU Guix. ;;; @@ -349,6 +349,31 @@ customizable permutation tests to assess the association between genomic region sets and other genomic features.") (license license:artistic2.0))) +(define-public r-geneplotter + (package + (name "r-geneplotter") + (version "1.60.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "geneplotter" version)) + (sha256 + (base32 + "10khr0pznxf3m0f5gzck9ymljrwcv3vamfmpskd51yjh36lhllqz")))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotate" ,r-annotate) + ("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-lattice" ,r-lattice) + ("r-rcolorbrewer" ,r-rcolorbrewer))) + (home-page "https://bioconductor.org/packages/geneplotter") + (synopsis "Graphics functions for genomic data") + (description + "This package provides functions for plotting genomic data.") + (license license:artistic2.0))) + (define-public r-diffbind (package (name "r-diffbind") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 09d3bf2090..73d6ecf135 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6347,31 +6347,6 @@ between two different types of motif instances using as much relevant information as possible.") (license (list license:gpl2+ license:gpl3+)))) -(define-public r-geneplotter - (package - (name "r-geneplotter") - (version "1.60.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "geneplotter" version)) - (sha256 - (base32 - "10khr0pznxf3m0f5gzck9ymljrwcv3vamfmpskd51yjh36lhllqz")))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotate" ,r-annotate) - ("r-annotationdbi" ,r-annotationdbi) - ("r-biobase" ,r-biobase) - ("r-biocgenerics" ,r-biocgenerics) - ("r-lattice" ,r-lattice) - ("r-rcolorbrewer" ,r-rcolorbrewer))) - (home-page "https://bioconductor.org/packages/geneplotter") - (synopsis "Graphics functions for genomic data") - (description - "This package provides functions for plotting genomic data.") - (license license:artistic2.0))) - (define-public r-genefilter (package (name "r-genefilter")