From c04f230eb3199b3b516584e102a87fc0e456806a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 25 Mar 2019 16:19:52 +0100 Subject: [PATCH] gnu: Add r-gosemsim. * gnu/packages/bioconductor.scm (r-gosemsim): New variable. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a17372da82..78af3f5153 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2644,3 +2644,30 @@ of the matrix are sorted according to a hierarchical clustering, and the corresponding dendrogram is plotted. Optionally, panels with additional information about samples and features can be added to the plot.") (license license:gpl2+))) + +(define-public r-gosemsim + (package + (name "r-gosemsim") + (version "2.8.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "GOSemSim" version)) + (sha256 + (base32 + "0ckihpy8jmgn2np1avprz76v9z7i5hqm2gj514c6dmmq3csbc7ib")))) + (properties `((upstream-name . "GOSemSim"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-go-db" ,r-go-db) + ("r-rcpp" ,r-rcpp))) + (home-page "https://guangchuangyu.github.io/software/GOSemSim") + (synopsis "GO-terms semantic similarity measures") + (description + "The semantic comparisons of @dfn{Gene Ontology} (GO) annotations provide +quantitative ways to compute similarities between genes and gene groups, and +have became important basis for many bioinformatics analysis approaches. +GOSemSim is an R package for semantic similarity computation among GO terms, +sets of GO terms, gene products and gene clusters.") + (license license:artistic2.0)))