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gnu: f-seq: Fix location of commons-cli.jar. 

* gnu/packages/bioinformatics.scm (f-seq)[arguments]: Fix location of
commons-cli.jar in the wrapper script.
This commit is contained in:
Ricardo Wurmus 2017-10-18 23:53:18 +02:00
parent 39427f9042
commit c0770feedd
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1 changed files with 7 additions and 2 deletions
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@ -10035,13 +10035,18 @@ browser.")
#:phases #:phases
(modify-phases %standard-phases (modify-phases %standard-phases
(replace 'install (replace 'install
(lambda* (#:key outputs #:allow-other-keys) (lambda* (#:key inputs outputs #:allow-other-keys)
(let* ((target (assoc-ref outputs "out")) (let* ((target (assoc-ref outputs "out"))
(doc (string-append target "/share/doc/f-seq/"))) (doc (string-append target "/share/doc/f-seq/")))
(mkdir-p target) (mkdir-p target)
(mkdir-p doc) (mkdir-p doc)
(substitute* "bin/linux/fseq" (substitute* "bin/linux/fseq"
(("java") (which "java"))) (("java") (which "java"))
(("\\$REALDIR/../lib/commons-cli-1.1.jar")
(string-append (assoc-ref inputs "java-commons-cli")
"/share/java/commons-cli.jar"))
(("REALDIR=.*")
(string-append "REALDIR=" target "/bin\n")))
(install-file "README.txt" doc) (install-file "README.txt" doc)
(install-file "bin/linux/fseq" (string-append target "/bin")) (install-file "bin/linux/fseq" (string-append target "/bin"))
(install-file "build~/fseq.jar" (string-append target "/lib")) (install-file "build~/fseq.jar" (string-append target "/lib"))