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gnu: Add r-dnacopy. 

* gnu/packages/bioconductor.scm (r-dnacopy): New variable.
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Ricardo Wurmus 2019-02-12 13:07:15 +01:00 committed by Ricardo Wurmus
parent ab61ce3730
commit c18dccffa2
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gnu/packages/bioconductor.scm
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@ -27,6 +27,7 @@
#:use-module (gnu packages bioinformatics) #:use-module (gnu packages bioinformatics)
#:use-module (gnu packages cran) #:use-module (gnu packages cran)
#:use-module (gnu packages compression) #:use-module (gnu packages compression)
#:use-module (gnu packages gcc)
#:use-module (gnu packages graph) #:use-module (gnu packages graph)
#:use-module (gnu packages maths) #:use-module (gnu packages maths)
#:use-module (gnu packages statistics) #:use-module (gnu packages statistics)
@ -1176,3 +1177,25 @@ Viewer (SAV) files, access data, and generate QC plots.")
"This package provides a quality control pipeline for ChIP-exo/nexus "This package provides a quality control pipeline for ChIP-exo/nexus
sequencing data.") sequencing data.")
(license license:gpl2+))) (license license:gpl2+)))
(define-public r-dnacopy
(package
(name "r-dnacopy")
(version "1.56.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DNAcopy" version))
(sha256
(base32
"04cqdqxhva66xwh1s2vffi56b9fcrqd4slcrvqasj5lp2rkjli82"))))
(properties `((upstream-name . "DNAcopy")))
(build-system r-build-system)
(native-inputs `(("gfortran" ,gfortran)))
(home-page "https://bioconductor.org/packages/DNAcopy")
(synopsis "DNA copy number data analysis")
(description
"This package implements the @dfn{circular binary segmentation} (CBS)
algorithm to segment DNA copy number data and identify genomic regions with
abnormal copy number.")
(license license:gpl2+)))