gnu: Add pigx.
* gnu/packages/bioinformatics.scm (pigx): New variable.
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@ -12941,6 +12941,42 @@ and interactive quality reports. The pipeline is designed to work with UMI
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based methods.")
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(license license:gpl3+)))
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(define-public pigx
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(package
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(name "pigx")
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(version "0.0.1")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://github.com/BIMSBbioinfo/pigx/"
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"releases/download/v" version
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"/pigx-" version ".tar.gz"))
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(sha256
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(base32
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"1nxb2hbp40yg3j7n56k4dhsd2fl1j8g0wpiiln56prqzljwnlgmf"))))
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(build-system gnu-build-system)
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(inputs
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`(("python" ,python)
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("pigx-bsseq" ,pigx-bsseq)
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("pigx-chipseq" ,pigx-chipseq)
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("pigx-rnaseq" ,pigx-rnaseq)
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("pigx-scrnaseq" ,pigx-scrnaseq)))
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(home-page "http://bioinformatics.mdc-berlin.de/pigx/")
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(synopsis "Analysis pipelines for genomics")
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(description "PiGx is a collection of genomics pipelines. It includes the
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following pipelines:
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@itemize
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@item PiGx BSseq for raw fastq read data of bisulfite experiments
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@item PiGx RNAseq for RNAseq samples
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@item PiGx scRNAseq for single cell dropseq analysis
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@item PiGx ChIPseq for reads from ChIPseq experiments
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@end itemize
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All pipelines are easily configured with a simple sample sheet and a
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descriptive settings file. The result is a set of comprehensive, interactive
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HTML reports with interesting findings about your samples.")
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(license license:gpl3+)))
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(define-public r-diversitree
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(package
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(name "r-diversitree")
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