gnu: Add pigx.

* gnu/packages/bioinformatics.scm (pigx): New variable.
master
Ricardo Wurmus 2018-03-16 15:40:01 +01:00
parent fe52a215e5
commit c1c9cc664b
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@ -12941,6 +12941,42 @@ and interactive quality reports. The pipeline is designed to work with UMI
based methods.")
(license license:gpl3+)))
(define-public pigx
(package
(name "pigx")
(version "0.0.1")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/BIMSBbioinfo/pigx/"
"releases/download/v" version
"/pigx-" version ".tar.gz"))
(sha256
(base32
"1nxb2hbp40yg3j7n56k4dhsd2fl1j8g0wpiiln56prqzljwnlgmf"))))
(build-system gnu-build-system)
(inputs
`(("python" ,python)
("pigx-bsseq" ,pigx-bsseq)
("pigx-chipseq" ,pigx-chipseq)
("pigx-rnaseq" ,pigx-rnaseq)
("pigx-scrnaseq" ,pigx-scrnaseq)))
(home-page "http://bioinformatics.mdc-berlin.de/pigx/")
(synopsis "Analysis pipelines for genomics")
(description "PiGx is a collection of genomics pipelines. It includes the
following pipelines:
@itemize
@item PiGx BSseq for raw fastq read data of bisulfite experiments
@item PiGx RNAseq for RNAseq samples
@item PiGx scRNAseq for single cell dropseq analysis
@item PiGx ChIPseq for reads from ChIPseq experiments
@end itemize
All pipelines are easily configured with a simple sample sheet and a
descriptive settings file. The result is a set of comprehensive, interactive
HTML reports with interesting findings about your samples.")
(license license:gpl3+)))
(define-public r-diversitree
(package
(name "r-diversitree")