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gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor). 

* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): ...to here.
This commit is contained in:
Ricardo Wurmus 2019-03-06 21:26:54 +01:00
parent 5acb9052cf
commit c3adc83054
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2 changed files with 32 additions and 32 deletions
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32
gnu/packages/bioconductor.scm
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@ -232,6 +232,38 @@ Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by
default." ) default." )
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-bsgenome-mmusculus-ucsc-mm10
(package
(name "r-bsgenome-mmusculus-ucsc-mm10")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Mmusculus.UCSC.mm10_"
version ".tar.gz"))
(sha256
(base32
"12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf"))))
(properties
`((upstream-name . "BSgenome.Mmusculus.UCSC.mm10")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/")
(synopsis "Full genome sequences for Mouse")
(description
"This package provides full genome sequences for Mus
musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored
in Biostrings objects.")
(license license:artistic2.0)))
(define-public r-org-dr-eg-db (define-public r-org-dr-eg-db
(package (package
(name "r-org-dr-eg-db") (name "r-org-dr-eg-db")

32
gnu/packages/bioinformatics.scm
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@ -8105,38 +8105,6 @@ plots the corresponding sequence logo as introduced by Schneider and
Stephens (1990).") Stephens (1990).")
(license license:lgpl2.0+))) (license license:lgpl2.0+)))
(define-public r-bsgenome-mmusculus-ucsc-mm10
(package
(name "r-bsgenome-mmusculus-ucsc-mm10")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Mmusculus.UCSC.mm10_"
version ".tar.gz"))
(sha256
(base32
"12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf"))))
(properties
`((upstream-name . "BSgenome.Mmusculus.UCSC.mm10")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/")
(synopsis "Full genome sequences for Mouse")
(description
"This package provides full genome sequences for Mus
musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored
in Biostrings objects.")
(license license:artistic2.0)))
(define-public r-txdb-mmusculus-ucsc-mm10-knowngene (define-public r-txdb-mmusculus-ucsc-mm10-knowngene
(package (package
(name "r-txdb-mmusculus-ucsc-mm10-knowngene") (name "r-txdb-mmusculus-ucsc-mm10-knowngene")