gnu: Add idr.
* gnu/packages/bioinformatics.scm (idr): New variable.
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@ -1136,6 +1136,56 @@ data. It also provides the bgzip, htsfile, and tabix utilities.")
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;; the rest is released under the Expat license
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;; the rest is released under the Expat license
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(license (list license:expat license:bsd-3))))
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(license (list license:expat license:bsd-3))))
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(define-public idr
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(package
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(name "idr")
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(version "2.0.0")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"https://github.com/nboley/idr/archive/"
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version ".tar.gz"))
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(file-name (string-append name "-" version ".tar.gz"))
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(sha256
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(base32
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"1k3x44biak00aiv3hpm1yd6nn4hhp7n0qnbs3zh2q9sw7qr1qj5r"))))
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(build-system python-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after
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'install 'wrap-program
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(let* ((out (assoc-ref outputs "out"))
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(python-version (string-take (string-take-right
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(assoc-ref inputs "python") 5) 3))
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(path (string-join
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(map (lambda (name)
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(string-append (assoc-ref inputs name)
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"/lib/python" python-version
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"/site-packages"))
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'("python-scipy"
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"python-numpy"
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"python-matplotlib"))
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":")))
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(wrap-program (string-append out "/bin/idr")
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`("PYTHONPATH" ":" prefix (,path))))
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#t)))))
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(inputs
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`(("python-scipy" ,python-scipy)
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("python-numpy" ,python-numpy)
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("python-matplotlib" ,python-matplotlib)))
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(native-inputs
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`(("python-cython" ,python-cython)
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("python-setuptools" ,python-setuptools)))
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(home-page "https://github.com/nboley/idr")
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(synopsis "Tool to measure the irreproducible discovery rate (IDR)")
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(description
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"The IDR (Irreproducible Discovery Rate) framework is a unified approach
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to measure the reproducibility of findings identified from replicate
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experiments and provide highly stable thresholds based on reproducibility.")
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(license license:gpl3+)))
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(define-public macs
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(define-public macs
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(package
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(package
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(name "macs")
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(name "macs")
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