gnu: Add biomaRt.

* gnu/packages/bioinformatics.scm (r-biomart): New variable.
master
Ricardo Wurmus 2015-12-18 14:06:52 +01:00
parent 8b7bce740d
commit c465fa72ed
1 changed files with 30 additions and 0 deletions

View File

@ -3515,6 +3515,36 @@ on Bioconductor or which replace R functions.")
annotation data packages using SQLite data storage.")
(license license:artistic2.0)))
(define-public r-biomart
(package
(name "r-biomart")
(version "2.26.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "biomaRt" version))
(sha256
(base32
"1s709055abj2gd35g6nnk5d2ai5ii09iir270l2xika6pi62gj3f"))))
(properties
`((upstream-name . "biomaRt")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-rcurl" ,r-rcurl)
("r-xml" ,r-xml)))
(home-page "http://bioconductor.org/packages/biomaRt")
(synopsis "Interface to BioMart databases")
(description
"biomaRt provides an interface to a growing collection of databases
implementing the @url{BioMart software suite, http://www.biomart.org}. The
package enables retrieval of large amounts of data in a uniform way without
the need to know the underlying database schemas or write complex SQL queries.
Examples of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene,
Wormbase and dbSNP mapped to Ensembl. These major databases give biomaRt
users direct access to a diverse set of data and enable a wide range of
powerful online queries from gene annotation to database mining.")
(license license:artistic2.0)))
(define-public r-qtl
(package
(name "r-qtl")