gnu: Add r-hitc.
* gnu/packages/bioinformatics.scm (r-hitc): New variable.
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@ -10166,6 +10166,35 @@ intra-chromosomal contact maps produced by genome-wide genome architecture
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assays such as Hi-C.")
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assays such as Hi-C.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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(define-public r-hitc
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(package
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(name "r-hitc")
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(version "1.22.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "HiTC" version))
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(sha256
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(base32
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"0288xa1jy6nzvz2ha07csmp6dirjw5r7p9vy69q2wsbyzr02ymkp"))))
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(properties `((upstream-name . "HiTC")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biostrings" ,r-biostrings)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-matrix" ,r-matrix)
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("r-rcolorbrewer" ,r-rcolorbrewer)
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("r-rtracklayer" ,r-rtracklayer)))
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(home-page "https://bioconductor.org/packages/HiTC")
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(synopsis "High throughput chromosome conformation capture analysis")
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(description
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"The HiTC package was developed to explore high-throughput \"C\" data
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such as 5C or Hi-C. Dedicated R classes as well as standard methods for
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quality controls, normalization, visualization, and further analysis are also
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provided.")
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(license license:artistic2.0)))
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(define-public r-qvalue
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(define-public r-qvalue
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(package
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(package
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(name "r-qvalue")
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(name "r-qvalue")
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