gnu: Add BSgenome.
* gnu/packages/bioinformatics.scm (r-bsgenome): New variable.
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@ -3836,6 +3836,36 @@ dependencies between GO terms can be implemented and applied.")
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;; Any version of the LGPL applies.
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;; Any version of the LGPL applies.
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(license license:lgpl2.1+)))
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(license license:lgpl2.1+)))
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(define-public r-bsgenome
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(package
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(name "r-bsgenome")
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(version "1.38.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "BSgenome" version))
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(sha256
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(base32
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"130w0m6q8kkca7gyz1aqj5jjhalwvwi6rk2yvbjrnj4gpnncyrd2"))))
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(properties
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`((upstream-name . "BSgenome")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-biostrings" ,r-biostrings)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-rsamtools" ,r-rsamtools)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-xvector" ,r-xvector)))
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(home-page "http://bioconductor.org/packages/BSgenome")
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(synopsis "Infrastructure for Biostrings-based genome data packages")
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(description
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"This package provides infrastructure shared by all Biostrings-based
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genome data packages and support for efficient SNP representation.")
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(license license:artistic2.0)))
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(define-public r-qtl
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(define-public r-qtl
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(package
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(package
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(name "r-qtl")
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(name "r-qtl")
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