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gnu: pigx-rnaseq: Update to 0.0.4. 

* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.4.
[arguments]: Remove "wrap-executable" phase.
This commit is contained in:
Ricardo Wurmus 2018-07-03 16:19:24 +02:00
parent 29cbf8178f
commit c7d5cd6ca5
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1 changed files with 2 additions and 10 deletions
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gnu/packages/bioinformatics.scm
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@ -12831,7 +12831,7 @@ once. This package provides tools to perform Drop-seq analyses.")
(define-public pigx-rnaseq (define-public pigx-rnaseq
(package (package
(name "pigx-rnaseq") (name "pigx-rnaseq")
(version "0.0.3") (version "0.0.4")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append "https://github.com/BIMSBbioinfo/pigx_rnaseq/" (uri (string-append "https://github.com/BIMSBbioinfo/pigx_rnaseq/"
@ -12839,7 +12839,7 @@ once. This package provides tools to perform Drop-seq analyses.")
"/pigx_rnaseq-" version ".tar.gz")) "/pigx_rnaseq-" version ".tar.gz"))
(sha256 (sha256
(base32 (base32
"0pz080k4ajlc4rlznkn3najy2a6874gb56rf9g4ag9wqz31q174j")))) "16gla23rmziimqan7w494q0nr7vfbp42zzkrl9fracmr4k7b1kzr"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
`(#:parallel-tests? #f ; not supported `(#:parallel-tests? #f ; not supported
@ -12851,14 +12851,6 @@ once. This package provides tools to perform Drop-seq analyses.")
(substitute* "Makefile.in" (substitute* "Makefile.in"
(("(^ tests/test_trim_galore/test.sh).*" _ m) m) (("(^ tests/test_trim_galore/test.sh).*" _ m) m)
(("^ test.sh") "")) (("^ test.sh") ""))
#t))
(add-after 'install 'wrap-executable
;; Make sure the executable finds all R modules.
(lambda* (#:key inputs outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(wrap-program (string-append out "/bin/pigx-rnaseq")
`("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE")))
`("PYTHONPATH" ":" = (,(getenv "PYTHONPATH")))))
#t))))) #t)))))
(inputs (inputs
`(("gzip" ,gzip) `(("gzip" ,gzip)