gnu: Add r-chipkernels.

* gnu/packages/bioinformatics.scm (r-chipkernels): New variable.
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Ricardo Wurmus 2016-11-24 15:22:03 +01:00
parent 1571f90e35
commit c827f20286
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@ -7577,6 +7577,42 @@ modules to sample traits. It also includes a number of utility functions for
data manipulation and visualization.")
(license license:gpl2+)))
(define-public r-chipkernels
(let ((commit "c9cfcacb626b1221094fb3490ea7bac0fd625372")
(revision "1"))
(package
(name "r-chipkernels")
(version (string-append "1.1-" revision "." (string-take commit 9)))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/ManuSetty/ChIPKernels.git")
(commit commit)))
(file-name (string-append name "-" version))
(sha256
(base32
"14bj5qhjm1hsm9ay561nfbqi9wxsa7y487df2idsaaf6z10nw4v0"))))
(build-system r-build-system)
(propagated-inputs
`(("r-iranges" ,r-iranges)
("r-xvector" ,r-xvector)
("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
("r-gtools" ,r-gtools)
("r-genomicranges" ,r-genomicranges)
("r-sfsmisc" ,r-sfsmisc)
("r-kernlab" ,r-kernlab)
("r-s4vectors" ,r-s4vectors)
("r-biocgenerics" ,r-biocgenerics)))
(home-page "https://github.com/ManuSetty/ChIPKernels")
(synopsis "Build string kernels for DNA Sequence analysis")
(description "ChIPKernels is an R package for building different string
kernels used for DNA Sequence analysis. A dictionary of the desired kernel
must be built and this dictionary can be used for determining kernels for DNA
Sequences.")
(license license:gpl2+))))
(define-public emboss
(package
(name "emboss")