gnu: Add r-chipkernels.
* gnu/packages/bioinformatics.scm (r-chipkernels): New variable.
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@ -7577,6 +7577,42 @@ modules to sample traits. It also includes a number of utility functions for
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data manipulation and visualization.")
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(license license:gpl2+)))
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(define-public r-chipkernels
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(let ((commit "c9cfcacb626b1221094fb3490ea7bac0fd625372")
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(revision "1"))
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(package
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(name "r-chipkernels")
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(version (string-append "1.1-" revision "." (string-take commit 9)))
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/ManuSetty/ChIPKernels.git")
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(commit commit)))
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(file-name (string-append name "-" version))
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(sha256
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(base32
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"14bj5qhjm1hsm9ay561nfbqi9wxsa7y487df2idsaaf6z10nw4v0"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-iranges" ,r-iranges)
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("r-xvector" ,r-xvector)
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("r-biostrings" ,r-biostrings)
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("r-bsgenome" ,r-bsgenome)
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("r-gtools" ,r-gtools)
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("r-genomicranges" ,r-genomicranges)
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("r-sfsmisc" ,r-sfsmisc)
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("r-kernlab" ,r-kernlab)
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("r-s4vectors" ,r-s4vectors)
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("r-biocgenerics" ,r-biocgenerics)))
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(home-page "https://github.com/ManuSetty/ChIPKernels")
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(synopsis "Build string kernels for DNA Sequence analysis")
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(description "ChIPKernels is an R package for building different string
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kernels used for DNA Sequence analysis. A dictionary of the desired kernel
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must be built and this dictionary can be used for determining kernels for DNA
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Sequences.")
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(license license:gpl2+))))
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(define-public emboss
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(package
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(name "emboss")
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