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gnu: vsearch: Update to 1.10.0. 

* gnu/packages/bioinformatics.scm (vsearch): Update to 1.10.0.
[origin]: Adapt to changes in bundling of cityhash.
This commit is contained in:
Ben Woodcroft 2016-02-15 22:22:01 +10:00
parent a64a8c465d
commit cf6edaba74
1 changed files with 19 additions and 8 deletions
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27
gnu/packages/bioinformatics.scm
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@ -1,3 +1,4 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014, 2015, 2016 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016 Ben Woodcroft <donttrustben@gmail.com>
@ -3353,7 +3354,7 @@ data in the form of VCF files.")
(define-public vsearch
(package
(name "vsearch")
(version "1.4.1")
(version "1.10.0")
(source
(origin
(method url-fetch)
@ -3363,7 +3364,7 @@ data in the form of VCF files.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0b1359wbzgb2cm04h7dq05v80vik88hnsv298xxd1q1f2q4ydni7"))
"1i3bad7gnn2y3a1yfixzshd99xdkjc8w5bxzgifpysc6jiljwvb5"))
(modules '((guix build utils)))
(snippet
'(begin
@ -3373,14 +3374,24 @@ data in the form of VCF files.")
-O3 -mtune=native -Wall -Wsign-compare")
(string-append "AM_CXXFLAGS=-lcityhash"
" -O3 -Wall -Wsign-compare"))
(("^__top_builddir__bin_vsearch_SOURCES = cityhash/city.h \\\\")
(("^__top_builddir__bin_vsearch_SOURCES = city.h \\\\")
"__top_builddir__bin_vsearch_SOURCES = \\")
(("^cityhash/config.h \\\\") "\\")
(("^cityhash/city.cc \\\\") "\\"))
(("^city.h \\\\") "\\")
(("^citycrc.h \\\\") "\\")
(("^libcityhash_a.*") "")
(("noinst_LIBRARIES = libcpu_sse2.a libcpu_ssse3.a \
libcityhash.a")
"noinst_LIBRARIES = libcpu_sse2.a libcpu_ssse3.a")
(("__top_builddir__bin_vsearch_LDADD = libcpu_ssse3.a \
libcpu_sse2.a libcityhash.a")
"__top_builddir__bin_vsearch_LDADD = libcpu_ssse3.a \
libcpu_sse2.a -lcityhash"))
(substitute* "src/vsearch.h"
(("^\\#include \"cityhash/city.h\"")
"#include <city.h>"))
(delete-file-recursively "src/cityhash")
(("^\\#include \"city.h\"") "#include <city.h>")
(("^\\#include \"citycrc.h\"") "#include <citycrc.h>"))
(delete-file "src/city.h")
(delete-file "src/citycrc.h")
(delete-file "src/city.cc")
#t))))
(build-system gnu-build-system)
(arguments