gnu: Add r-genomicinteractions.

* gnu/packages/bioconductor.scm (r-genomicinteractions): New variable.
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Ricardo Wurmus 2018-06-15 08:21:17 +02:00
parent a32279ffb6
commit cf9a29b24c
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1 changed files with 42 additions and 2 deletions

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@ -24,10 +24,11 @@
#:use-module (guix download)
#:use-module (guix build-system r)
#:use-module (gnu packages)
#:use-module (gnu packages bioinformatics)
#:use-module (gnu packages cran)
#:use-module (gnu packages compression)
#:use-module (gnu packages statistics)
#:use-module (gnu packages bioinformatics))
#:use-module (gnu packages graph)
#:use-module (gnu packages statistics))
(define-public r-bsgenome-dmelanogaster-ucsc-dm6
(package
@ -635,3 +636,42 @@ parsing of genetic sequencing data from ribosome profiling experiments.")
for storing and manipulating genomic interaction data from Hi-C and ChIA-PET
experiments.")
(license license:gpl3)))
(define-public r-genomicinteractions
(package
(name "r-genomicinteractions")
(version "1.14.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "GenomicInteractions" version))
(sha256
(base32
"0cnagprxj0b7p6s29iyhqwxj7hgmrh75gj52y4dlil790d1bmq2q"))))
(properties
`((upstream-name . "GenomicInteractions")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-data-table" ,r-data-table)
("r-dplyr" ,r-dplyr)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-gridextra" ,r-gridextra)
("r-gviz" ,r-gviz)
("r-igraph" ,r-igraph)
("r-interactionset" ,r-interactionset)
("r-iranges" ,r-iranges)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-stringr" ,r-stringr)))
(home-page "https://github.com/ComputationalRegulatoryGenomicsICL/GenomicInteractions/")
(synopsis "R package for handling genomic interaction data")
(description
"This R package provides tools for handling genomic interaction data,
such as ChIA-PET/Hi-C, annotating genomic features with interaction
information and producing various plots and statistics.")
(license license:gpl3)))