gnu: Add r-txdb-mmusculus-ucsc-mm9-knowngene.
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene): New variable.
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@ -197,6 +197,36 @@ default." )
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genomes and gene ID formats, largely based on the UCSC table browser.")
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(license license:lgpl2.0+)))
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(define-public r-txdb-mmusculus-ucsc-mm9-knowngene
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(package
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(name "r-txdb-mmusculus-ucsc-mm9-knowngene")
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(version "3.2.2")
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(source (origin
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(method url-fetch)
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;; We cannot use bioconductor-uri here because this tarball is
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;; located under "data/annotation/" instead of "bioc/".
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(uri (string-append "https://bioconductor.org/packages/"
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"release/data/annotation/src/contrib"
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"/TxDb.Mmusculus.UCSC.mm9.knownGene_"
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version ".tar.gz"))
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(sha256
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(base32
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"16bjxy00363hf91ik2mqlqls86i07gia72qh92xc3l1ncch61mx2"))))
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(properties
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`((upstream-name . "TxDb.Mmusculus.UCSC.mm9.knownGene")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-genomicfeatures" ,r-genomicfeatures)
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("r-annotationdbi" ,r-annotationdbi)))
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(home-page
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"https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm9.knownGene/")
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(synopsis "Annotation package for mouse genome in TxDb format")
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(description
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"This package provides an annotation database of Mouse genome data. It
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is derived from the UCSC mm9 genome and based on the \"knownGene\" track. The
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database is exposed as a @code{TxDb} object.")
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(license license:artistic2.0)))
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(define-public r-hpar
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(package
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