gnu: Add r-fastseg.

* gnu/packages/bioinformatics.scm (r-fastseg): New variable.
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Ricardo Wurmus 2017-08-15 15:11:45 +02:00
parent b31e4a9693
commit d4a1e918cb
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@ -9289,6 +9289,36 @@ modification. The client creates and manages a local cache of files retrieved
by the user, helping with quick and reproducible access.")
(license license:artistic2.0)))
(define-public r-fastseg
(package
(name "r-fastseg")
(version "1.22.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "fastseg" version))
(sha256
(base32
"083wiz03q9mynwchs9frlpp6c84dncri5ncibx6h82p228cpja6h"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-s4vectors" ,r-s4vectors)))
(home-page "http://www.bioinf.jku.at/software/fastseg/index.html")
(synopsis "Fast segmentation algorithm for genetic sequencing data")
(description
"Fastseg implements a very fast and efficient segmentation algorithm.
It can segment data from DNA microarrays and data from next generation
sequencing for example to detect copy number segments. Further it can segment
data from RNA microarrays like tiling arrays to identify transcripts. Most
generally, it can segment data given as a matrix or as a vector. Various data
formats can be used as input to fastseg like expression set objects for
microarrays or GRanges for sequencing data.")
(license license:lgpl2.0+)))
(define htslib-for-sambamba
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
(package