gnu: Add r-fastseg.
* gnu/packages/bioinformatics.scm (r-fastseg): New variable.
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@ -9289,6 +9289,36 @@ modification. The client creates and manages a local cache of files retrieved
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by the user, helping with quick and reproducible access.")
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(license license:artistic2.0)))
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(define-public r-fastseg
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(package
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(name "r-fastseg")
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(version "1.22.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "fastseg" version))
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(sha256
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(base32
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"083wiz03q9mynwchs9frlpp6c84dncri5ncibx6h82p228cpja6h"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-s4vectors" ,r-s4vectors)))
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(home-page "http://www.bioinf.jku.at/software/fastseg/index.html")
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(synopsis "Fast segmentation algorithm for genetic sequencing data")
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(description
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"Fastseg implements a very fast and efficient segmentation algorithm.
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It can segment data from DNA microarrays and data from next generation
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sequencing for example to detect copy number segments. Further it can segment
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data from RNA microarrays like tiling arrays to identify transcripts. Most
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generally, it can segment data given as a matrix or as a vector. Various data
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formats can be used as input to fastseg like expression set objects for
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microarrays or GRanges for sequencing data.")
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(license license:lgpl2.0+)))
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(define htslib-for-sambamba
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(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
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(package
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