gnu: Add topGO.

* gnu/packages/bioinformatics.scm (r-topgo): New variable.
master
Ricardo Wurmus 2015-12-23 17:31:03 +01:00
parent e05c37da4a
commit d547ce5e70
1 changed files with 29 additions and 0 deletions

View File

@ -3807,6 +3807,35 @@ extracting the desired features in a convenient format.")
information about the latest version of the Gene Ontologies.")
(license license:artistic2.0)))
(define-public r-topgo
(package
(name "r-topgo")
(version "2.22.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "topGO" version))
(sha256
(base32
"029j9nb39b8l9xlzsp83pmjr8ap247aia387yzaa1yyw8klapdaf"))))
(properties
`((upstream-name . "topGO")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-go-db" ,r-go-db)
("r-sparsem" ,r-sparsem)))
(home-page "http://bioconductor.org/packages/topGO")
(synopsis "Enrichment analysis for gene ontology")
(description
"The topGO package provides tools for testing @dfn{gene ontology} (GO)
terms while accounting for the topology of the GO graph. Different test
statistics and different methods for eliminating local similarities and
dependencies between GO terms can be implemented and applied.")
;; Any version of the LGPL applies.
(license license:lgpl2.1+)))
(define-public r-qtl
(package
(name "r-qtl")