gnu: Add topGO.
* gnu/packages/bioinformatics.scm (r-topgo): New variable.
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@ -3807,6 +3807,35 @@ extracting the desired features in a convenient format.")
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information about the latest version of the Gene Ontologies.")
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(license license:artistic2.0)))
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(define-public r-topgo
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(package
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(name "r-topgo")
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(version "2.22.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "topGO" version))
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(sha256
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(base32
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"029j9nb39b8l9xlzsp83pmjr8ap247aia387yzaa1yyw8klapdaf"))))
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(properties
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`((upstream-name . "topGO")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-go-db" ,r-go-db)
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("r-sparsem" ,r-sparsem)))
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(home-page "http://bioconductor.org/packages/topGO")
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(synopsis "Enrichment analysis for gene ontology")
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(description
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"The topGO package provides tools for testing @dfn{gene ontology} (GO)
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terms while accounting for the topology of the GO graph. Different test
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statistics and different methods for eliminating local similarities and
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dependencies between GO terms can be implemented and applied.")
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;; Any version of the LGPL applies.
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(license license:lgpl2.1+)))
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(define-public r-qtl
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(package
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(name "r-qtl")
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