gnu: Add MACS.

* gnu/packages/bioinformatics.scm (macs): New variable.
master
Ricardo Wurmus 2015-02-26 17:10:39 +01:00
parent a2fb1492af
commit d57e6d0f8e
1 changed files with 31 additions and 0 deletions

View File

@ -368,6 +368,37 @@ particular, reads spanning multiple exons.")
from high-throughput sequencing assays.")
(license license:gpl3+)))
(define-public macs
(package
(name "macs")
(version "2.1.0.20140616")
(source (origin
(method url-fetch)
(uri (string-append
"https://pypi.python.org/packages/source/M/MACS2/MACS2-"
version ".tar.gz"))
(sha256
(base32
"11lmiw6avqhwn75sn59g4lfkrr2kk20r3rgfbx9xfqb8rg9mi2n6"))))
(build-system python-build-system)
(arguments
`(#:python ,python-2 ; only compatible with Python 2.7
#:tests? #f)) ; no test target
(inputs
`(("python-numpy" ,python2-numpy)))
(native-inputs
`(("python-setuptools" ,python2-setuptools)))
(home-page "http://github.com/taoliu/MACS/")
(synopsis "Model based analysis for ChIP-Seq data")
(description
"MACS is an implementation of a ChIP-Seq analysis algorithm for
identifying transcript factor binding sites named Model-based Analysis of
ChIP-Seq (MACS). MACS captures the influence of genome complexity to evaluate
the significance of enriched ChIP regions and it improves the spatial
resolution of binding sites through combining the information of both
sequencing tag position and orientation.")
(license license:bsd-3)))
(define-public rseqc
(package
(name "rseqc")