gnu: Add MACS.
* gnu/packages/bioinformatics.scm (macs): New variable.
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@ -368,6 +368,37 @@ particular, reads spanning multiple exons.")
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from high-throughput sequencing assays.")
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from high-throughput sequencing assays.")
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(license license:gpl3+)))
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(license license:gpl3+)))
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(define-public macs
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(package
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(name "macs")
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(version "2.1.0.20140616")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"https://pypi.python.org/packages/source/M/MACS2/MACS2-"
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version ".tar.gz"))
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(sha256
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(base32
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"11lmiw6avqhwn75sn59g4lfkrr2kk20r3rgfbx9xfqb8rg9mi2n6"))))
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(build-system python-build-system)
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(arguments
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`(#:python ,python-2 ; only compatible with Python 2.7
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#:tests? #f)) ; no test target
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(inputs
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`(("python-numpy" ,python2-numpy)))
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(native-inputs
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`(("python-setuptools" ,python2-setuptools)))
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(home-page "http://github.com/taoliu/MACS/")
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(synopsis "Model based analysis for ChIP-Seq data")
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(description
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"MACS is an implementation of a ChIP-Seq analysis algorithm for
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identifying transcript factor binding sites named Model-based Analysis of
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ChIP-Seq (MACS). MACS captures the influence of genome complexity to evaluate
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the significance of enriched ChIP regions and it improves the spatial
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resolution of binding sites through combining the information of both
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sequencing tag position and orientation.")
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(license license:bsd-3)))
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(define-public rseqc
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(define-public rseqc
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(package
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(package
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(name "rseqc")
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(name "rseqc")
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