From d60772dcdd55c0f8e236d40b76eb06eab790ab77 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?G=C3=A1bor=20Boskovits?= Date: Thu, 26 Jul 2018 12:42:59 +0200 Subject: [PATCH] gnu: java-picard: Fix manifest. * gnu/packages/bioinformatics.scm (java-picard)[arguments]: Adjust phase 'edit-classpath-in-manifest for the new manifest generation code. --- gnu/packages/bioinformatics.scm | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 245e7dd564..73cca16717 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10,6 +10,7 @@ ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice ;;; Copyright © 2017 Arun Isaac ;;; Copyright © 2018 Joshua Sierles, Nextjournal +;;; Copyright © 2018 Gábor Boskovits ;;; ;;; This file is part of GNU Guix. ;;; @@ -3240,12 +3241,16 @@ VCF.") (msg (format #f "\ Class-Path: /~a \ - ~a/share/java/htsjdk.jar${line.separator}" + ~a/share/java/htsjdk.jar${line.separator}${line.separator}" ;; maximum line length is 70 (string-tabulate (const #\b) 57) (assoc-ref inputs "java-htsjdk")))) (if (member "manifest" name) `(,tag ,@kids + (replaceregexp + (@ (file "${manifest.file}") + (match "\\r\\n\\r\\n") + (replace "${line.separator}"))) (echo (@ (message ,msg) (file "${manifest.file}")