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gnu: bowtie: Update to 2.3.2. 

* gnu/packages/bioinformatics.scm (bowtie): Update to 2.3.2.
[inputs]: Add zlib.
master
Ben Woodcroft 2017-07-14 18:54:03 +10:00
parent 78a81e37cd
commit d6e63cf31c
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1 changed files with 10 additions and 8 deletions
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gnu/packages/bioinformatics.scm
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@ -1195,7 +1195,7 @@ errors at the end of reads.")
(define-public bowtie (define-public bowtie
(package (package
(name "bowtie") (name "bowtie")
(version "2.2.9") (version "2.3.2")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append "https://github.com/BenLangmead/bowtie2/archive/v" (uri (string-append "https://github.com/BenLangmead/bowtie2/archive/v"
@ -1203,7 +1203,7 @@ errors at the end of reads.")
(file-name (string-append name "-" version ".tar.gz")) (file-name (string-append name "-" version ".tar.gz"))
(sha256 (sha256
(base32 (base32
"1vp5db8i7is57iwjybcdg18f5ivyzlj5g1ix1nlvxainzivhz55g")) "0hwa5r9qbglppb7sz5z79rlmmddr3n51n468jb3wh8rwjgn3yr90"))
(modules '((guix build utils))) (modules '((guix build utils)))
(snippet (snippet
'(substitute* "Makefile" '(substitute* "Makefile"
@ -1211,12 +1211,14 @@ errors at the end of reads.")
(("-DBUILD_HOST=.*") "-DBUILD_HOST=\"\\\"guix\\\"\"") (("-DBUILD_HOST=.*") "-DBUILD_HOST=\"\\\"guix\\\"\"")
(("-DBUILD_TIME=.*") "-DBUILD_TIME=\"\\\"0\\\"\""))))) (("-DBUILD_TIME=.*") "-DBUILD_TIME=\"\\\"0\\\"\"")))))
(build-system gnu-build-system) (build-system gnu-build-system)
(inputs `(("perl" ,perl) (inputs
("perl-clone" ,perl-clone) `(("perl" ,perl)
("perl-test-deep" ,perl-test-deep) ("perl-clone" ,perl-clone)
("perl-test-simple" ,perl-test-simple) ("perl-test-deep" ,perl-test-deep)
("python" ,python-2) ("perl-test-simple" ,perl-test-simple)
("tbb" ,tbb))) ("python" ,python-2)
("tbb" ,tbb)
("zlib" ,zlib)))
(arguments (arguments
'(#:make-flags '(#:make-flags
(list "allall" (list "allall"