gnu: Add r-wgcna.

* gnu/packages/bioinformatics.scm (r-wgcna): New variable.
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Ricardo Wurmus 2016-11-24 15:15:45 +01:00
parent 1bd46f5520
commit d71605294f
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1 changed files with 36 additions and 0 deletions

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@ -7541,6 +7541,42 @@ characterization and visualization of a wide range of mutational patterns
in SNV base substitution data.")
(license license:expat)))
(define-public r-wgcna
(package
(name "r-wgcna")
(version "1.51")
(source
(origin
(method url-fetch)
(uri (cran-uri "WGCNA" version))
(sha256
(base32
"0hzvnhw76vwg8bl8x368f0c5szpwb8323bmrb3bir93i5bmfjsxx"))))
(properties `((upstream-name . "WGCNA")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-doparallel" ,r-doparallel)
("r-dynamictreecut" ,r-dynamictreecut)
("r-fastcluster" ,r-fastcluster)
("r-foreach" ,r-foreach)
("r-go-db" ,r-go-db)
("r-hmisc" ,r-hmisc)
("r-impute" ,r-impute)
("r-matrixstats" ,r-matrixstats)
("r-preprocesscore" ,r-preprocesscore)))
(home-page
"http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/")
(synopsis "Weighted correlation network analysis")
(description
"This package provides functions necessary to perform Weighted
Correlation Network Analysis on high-dimensional data. It includes functions
for rudimentary data cleaning, construction and summarization of correlation
networks, module identification and functions for relating both variables and
modules to sample traits. It also includes a number of utility functions for
data manipulation and visualization.")
(license license:gpl2+)))
(define-public emboss
(package
(name "emboss")