gnu: r-rhdf5: Update to 2.24.0.

* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.24.0.
[arguments]: Remove.
[propagated-inputs]: Remove r-zlibbioc; add r-rhdf5lib.
[inputs]: Remove perl.
This commit is contained in:
Ricardo Wurmus 2018-06-02 12:00:10 +02:00
parent c76e8baf9e
commit d73c5728f3
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1 changed files with 4 additions and 25 deletions

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@ -8797,39 +8797,18 @@ of gene-level counts.")
(define-public r-rhdf5 (define-public r-rhdf5
(package (package
(name "r-rhdf5") (name "r-rhdf5")
(version "2.22.0") (version "2.24.0")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (bioconductor-uri "rhdf5" version)) (uri (bioconductor-uri "rhdf5" version))
(sha256 (sha256
(base32 (base32
"145858qg1xan6imxcbprzq3yn3mdf532aahdr6cibvdjg47hs4c1")))) "15cmmchhk8bnp94gxg0zk9qyzdjx5kv16dzpbnb62mkq7ydmifx6"))))
(build-system r-build-system) (build-system r-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'unpack-smallhdf5
(lambda* (#:key outputs #:allow-other-keys)
(system* "tar" "-xzvf"
"src/hdf5source/hdf5small.tgz" "-C" "src/" )
(substitute* "src/hdf5/configure"
(("/bin/mv") "mv"))
;; Remove timestamp and host system information to make
;; the build reproducible.
(substitute* "src/hdf5/src/libhdf5.settings.in"
(("Configured on: @CONFIG_DATE@")
"Configured on: Guix")
(("Uname information:.*")
"Uname information: Linux\n")
;; Remove unnecessary store reference.
(("C Compiler:.*")
"C Compiler: GCC\n"))
#t)))))
(propagated-inputs (propagated-inputs
`(("r-zlibbioc" ,r-zlibbioc))) `(("r-rhdf5lib" ,r-rhdf5lib)))
(inputs (inputs
`(("perl" ,perl) `(("zlib" ,zlib)))
("zlib" ,zlib)))
(home-page "https://bioconductor.org/packages/rhdf5") (home-page "https://bioconductor.org/packages/rhdf5")
(synopsis "HDF5 interface to R") (synopsis "HDF5 interface to R")
(description (description