gnu: r-rhdf5: Update to 2.24.0.
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.24.0. [arguments]: Remove. [propagated-inputs]: Remove r-zlibbioc; add r-rhdf5lib. [inputs]: Remove perl.
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@ -8797,39 +8797,18 @@ of gene-level counts.")
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(define-public r-rhdf5
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(define-public r-rhdf5
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(package
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(package
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(name "r-rhdf5")
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(name "r-rhdf5")
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(version "2.22.0")
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(version "2.24.0")
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(source (origin
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(source (origin
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(method url-fetch)
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(method url-fetch)
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(uri (bioconductor-uri "rhdf5" version))
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(uri (bioconductor-uri "rhdf5" version))
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(sha256
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(sha256
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(base32
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(base32
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"145858qg1xan6imxcbprzq3yn3mdf532aahdr6cibvdjg47hs4c1"))))
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"15cmmchhk8bnp94gxg0zk9qyzdjx5kv16dzpbnb62mkq7ydmifx6"))))
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(build-system r-build-system)
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(build-system r-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'unpack-smallhdf5
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(lambda* (#:key outputs #:allow-other-keys)
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(system* "tar" "-xzvf"
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"src/hdf5source/hdf5small.tgz" "-C" "src/" )
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(substitute* "src/hdf5/configure"
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(("/bin/mv") "mv"))
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;; Remove timestamp and host system information to make
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;; the build reproducible.
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(substitute* "src/hdf5/src/libhdf5.settings.in"
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(("Configured on: @CONFIG_DATE@")
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"Configured on: Guix")
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(("Uname information:.*")
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"Uname information: Linux\n")
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;; Remove unnecessary store reference.
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(("C Compiler:.*")
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"C Compiler: GCC\n"))
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#t)))))
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(propagated-inputs
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(propagated-inputs
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`(("r-zlibbioc" ,r-zlibbioc)))
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`(("r-rhdf5lib" ,r-rhdf5lib)))
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(inputs
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(inputs
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`(("perl" ,perl)
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`(("zlib" ,zlib)))
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("zlib" ,zlib)))
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(home-page "https://bioconductor.org/packages/rhdf5")
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(home-page "https://bioconductor.org/packages/rhdf5")
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(synopsis "HDF5 interface to R")
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(synopsis "HDF5 interface to R")
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(description
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(description
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