gnu: Add r-variancepartition.

* gnu/packages/bioconductor.scm (r-variancepartition): New variable.
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Ricardo Wurmus 2019-09-15 22:57:47 +02:00
parent 2a360cf6ac
commit d80a15696b
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@ -6006,3 +6006,44 @@ same genome coordinate system.")
"This package is designed to conduct transcriptome analysis for tiling
arrays based on fast wavelet-based functional models.")
(license license:gpl2+)))
(define-public r-variancepartition
(package
(name "r-variancepartition")
(version "1.14.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "variancePartition" version))
(sha256
(base32
"1ycapwb2mq57xibrzzjz9zwxqz4nwz9f3n5gskhlr5vcs7irkjd6"))))
(properties
`((upstream-name . "variancePartition")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-colorramps" ,r-colorramps)
("r-doparallel" ,r-doparallel)
("r-foreach" ,r-foreach)
("r-ggplot2" ,r-ggplot2)
("r-gplots" ,r-gplots)
("r-iterators" ,r-iterators)
("r-limma" ,r-limma)
("r-lme4" ,r-lme4)
("r-lmertest" ,r-lmertest)
("r-mass" ,r-mass)
("r-pbkrtest" ,r-pbkrtest)
("r-progress" ,r-progress)
("r-reshape2" ,r-reshape2)
("r-scales" ,r-scales)))
(home-page "https://bioconductor.org/packages/variancePartition/")
(synopsis "Analyze variation in gene expression experiments")
(description
"This is a package providing tools to quantify and interpret multiple
sources of biological and technical variation in gene expression experiments.
It uses a linear mixed model to quantify variation in gene expression
attributable to individual, tissue, time point, or technical variables. The
package includes dream differential expression analysis for repeated
measures.")
(license license:gpl2+)))