gnu: Add r-variancepartition.
* gnu/packages/bioconductor.scm (r-variancepartition): New variable.
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@ -6006,3 +6006,44 @@ same genome coordinate system.")
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"This package is designed to conduct transcriptome analysis for tiling
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arrays based on fast wavelet-based functional models.")
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(license license:gpl2+)))
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(define-public r-variancepartition
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(package
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(name "r-variancepartition")
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(version "1.14.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "variancePartition" version))
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(sha256
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(base32
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"1ycapwb2mq57xibrzzjz9zwxqz4nwz9f3n5gskhlr5vcs7irkjd6"))))
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(properties
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`((upstream-name . "variancePartition")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-colorramps" ,r-colorramps)
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("r-doparallel" ,r-doparallel)
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("r-foreach" ,r-foreach)
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("r-ggplot2" ,r-ggplot2)
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("r-gplots" ,r-gplots)
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("r-iterators" ,r-iterators)
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("r-limma" ,r-limma)
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("r-lme4" ,r-lme4)
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("r-lmertest" ,r-lmertest)
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("r-mass" ,r-mass)
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("r-pbkrtest" ,r-pbkrtest)
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("r-progress" ,r-progress)
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("r-reshape2" ,r-reshape2)
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("r-scales" ,r-scales)))
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(home-page "https://bioconductor.org/packages/variancePartition/")
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(synopsis "Analyze variation in gene expression experiments")
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(description
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"This is a package providing tools to quantify and interpret multiple
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sources of biological and technical variation in gene expression experiments.
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It uses a linear mixed model to quantify variation in gene expression
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attributable to individual, tissue, time point, or technical variables. The
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package includes dream differential expression analysis for repeated
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measures.")
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(license license:gpl2+)))
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