gnu: khmer: Make gzip timestamps writable.
* gnu/packages/bioinformatics.scm (khmer)[arguments]: Add custom phase to make gzip timestamps writable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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@ -13,6 +13,7 @@
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;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com>
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;;; Copyright © 2018 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
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;;; Copyright © 2019 Maxim Cournoyer <maxim.cournoyer@gmail.com>
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;;; Copyright © 2019 Brian Leung <bkleung89@gmail.com>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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@ -4206,8 +4207,15 @@ command, or queried for specific k-mers with @code{jellyfish query}.")
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(modify-phases %standard-phases
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(add-after 'unpack 'set-cc
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(lambda _ (setenv "CC" "gcc") #t))
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;; FIXME: This fails with "permission denied".
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(delete 'reset-gzip-timestamps))))
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(add-before 'reset-gzip-timestamps 'make-files-writable
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(lambda* (#:key outputs #:allow-other-keys)
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;; Make sure .gz files are writable so that the
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;; 'reset-gzip-timestamps' phase can do its work.
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(let ((out (assoc-ref outputs "out")))
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(for-each make-file-writable
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(find-files out "\\.gz$"))
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#t))))))
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(native-inputs
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`(("python-cython" ,python-cython)
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("python-pytest" ,python-pytest)
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