gnu: Add plink-ng.
* gnu/packages/bioinformatics.scm (plink-ng): New variable.
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@ -4889,6 +4889,43 @@ subsequent visualization, annotation and storage of results.")
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;; LGPLv2.1+
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(license (list license:gpl2 license:lgpl2.1+))))
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(define-public plink-ng
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(package (inherit plink)
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(name "plink-ng")
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(version "1.90b4")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "https://github.com/chrchang/plink-ng/archive/v"
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version ".tar.gz"))
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(file-name (string-append name "-" version ".tar.gz"))
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(sha256
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(base32 "09ixrds009aczjswxr2alcb774mksq5g0v78dgjjn1h4dky0kf9a"))))
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(build-system gnu-build-system)
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(arguments
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'(#:tests? #f ;no "check" target
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#:make-flags (list "BLASFLAGS=-llapack -lopenblas"
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"CFLAGS=-Wall -O2 -DDYNAMIC_ZLIB=1"
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"ZLIB=-lz"
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"-f" "Makefile.std")
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#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'chdir
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(lambda _ (chdir "1.9") #t))
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(delete 'configure) ; no "configure" script
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(replace 'install
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((bin (string-append (assoc-ref outputs "out")
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"/bin/")))
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(install-file "plink" bin)
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#t))))))
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(inputs
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`(("zlib" ,zlib)
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("lapack" ,lapack)
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("openblas" ,openblas)))
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(home-page "https://www.cog-genomics.org/plink/")
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(license license:gpl3+)))
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(define-public smithlab-cpp
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(let ((revision "1")
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(commit "728a097bec88c6f4b8528b685932049e660eff2e"))
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