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gnu: Add python-loompy-for-pigx-scrnaseq. 

* gnu/packages/bioinformatics.scm (python-loompy-for-pigx-scrnaseq): New variable.
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Ricardo Wurmus 2019-04-02 16:11:12 +02:00
parent 82cc117450
commit dc112a0fe2
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1 changed files with 17 additions and 0 deletions
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gnu/packages/bioinformatics.scm
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@ -12038,6 +12038,23 @@ graphs. This library makes it easy to work with @file{.loom} files for
single-cell RNA-seq data.") single-cell RNA-seq data.")
(license license:bsd-3))) (license license:bsd-3)))
;; pigx-scrnaseq does not work with the latest version of loompy.
(define-public python-loompy-for-pigx-scrnaseq
(package (inherit python-loompy)
(name "python-loompy")
(version "2.0.3")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/linnarsson-lab/loompy.git")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"0pjyl532pl8sbv71yci6h0agchn0naw2qjcwj50n6afrsahbsag3"))))
;; There are none.
(arguments '(#:tests? #f))))
;; We cannot use the latest commit because it requires Java 9. ;; We cannot use the latest commit because it requires Java 9.
(define-public java-forester (define-public java-forester
(let ((commit "86b07efe302d5094b42deed9260f719a4c4ac2e6") (let ((commit "86b07efe302d5094b42deed9260f719a4c4ac2e6")