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gnu: python2-pbcore: Update to 1.2.8. 

* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.8.
[native-inputs]: Add python2-docutils, python2-nose, python2-sphinx.
This commit is contained in:
Efraim Flashner 2016-03-30 22:45:35 +03:00
parent 96e9f097ee
commit ddb8312911
1 changed files with 8 additions and 7 deletions
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15
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@ -4,6 +4,7 @@
;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl> ;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2016 Roel Janssen <roel@gnu.org> ;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;; ;;;
;;; This file is part of GNU Guix. ;;; This file is part of GNU Guix.
;;; ;;;
@ -2507,16 +2508,13 @@ interrupted by stop codons. OrfM finds and prints these ORFs.")
(define-public python2-pbcore (define-public python2-pbcore
(package (package
(name "python2-pbcore") (name "python2-pbcore")
(version "0.9.3") (version "1.2.8")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append (uri (pypi-uri "pbcore" version))
"https://github.com/PacificBiosciences/pbcore/archive/"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256 (sha256
(base32 (base32
"1z46rwjac93jm87cbj2zgjg6qvsgs65140wkbbxsvxps7ai4pm09")))) "02pfn5raa3zf739672bg0dkx7z3j2c4nx7vmpfjqy5b12jrqpymk"))))
(build-system python-build-system) (build-system python-build-system)
(arguments `(#:python ,python-2)) ; pbcore requires Python 2.7 (arguments `(#:python ,python-2)) ; pbcore requires Python 2.7
(inputs (inputs
@ -2525,7 +2523,10 @@ interrupted by stop codons. OrfM finds and prints these ORFs.")
("python-pysam" ,python2-pysam) ("python-pysam" ,python2-pysam)
("python-h5py" ,python2-h5py))) ("python-h5py" ,python2-h5py)))
(native-inputs (native-inputs
`(("python-setuptools" ,python2-setuptools))) `(("python-docutils" ,python2-docutils)
("python-nose" ,python2-nose)
("python-setuptools" ,python2-setuptools)
("python-sphinx" ,python2-sphinx)))
(home-page "http://pacificbiosciences.github.io/pbcore/") (home-page "http://pacificbiosciences.github.io/pbcore/")
(synopsis "Library for reading and writing PacBio data files") (synopsis "Library for reading and writing PacBio data files")
(description (description