gnu: Add r-gage.
* gnu/packages/bioinformatics.scm (r-gage): New variable.
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@ -9454,6 +9454,35 @@ microarrays or GRanges for sequencing data.")
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@dfn{Kyoto Encyclopedia of Genes and Genomes} (KEGG) REST server.")
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(license license:artistic2.0)))
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(define-public r-gage
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(package
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(name "r-gage")
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(version "2.28.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "gage" version))
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(sha256
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(base32
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"1r14p88q3y736pkqm4pdimf1izy1xy3xgivmj3cr4dv65kjny1zk"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-graph" ,r-graph)
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("r-keggrest" ,r-keggrest)))
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(home-page "http://www.biomedcentral.com/1471-2105/10/161")
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(synopsis "Generally applicable gene-set enrichment for pathway analysis")
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(description
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"GAGE is a published method for gene set (enrichment or GSEA) or pathway
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analysis. GAGE is generally applicable independent of microarray or RNA-Seq
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data attributes including sample sizes, experimental designs, assay platforms,
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and other types of heterogeneity. The gage package provides functions for
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basic GAGE analysis, result processing and presentation. In addition, it
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provides demo microarray data and commonly used gene set data based on KEGG
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pathways and GO terms. These funtions and data are also useful for gene set
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analysis using other methods.")
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(license license:gpl2+)))
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(define-public r-qvalue
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(package
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(name "r-qvalue")
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