gnu: Add GenomicRanges.

* gnu/packages/bioinformatics.scm (r-genomicranges): New variable.
master
Ricardo Wurmus 2015-12-18 12:08:41 +01:00
parent 0e7d5560de
commit e2cd1d0fb9
1 changed files with 28 additions and 0 deletions

View File

@ -3309,6 +3309,34 @@ names in their natural, rather than lexicographic, order.")
\"externally\" (behind an R external pointer, or on disk).")
(license license:artistic2.0)))
(define-public r-genomicranges
(package
(name "r-genomicranges")
(version "1.22.2")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "GenomicRanges" version))
(sha256
(base32
"1jffvcs0jsi7q4l3pvjj6r73vll80csgkljvhqp0g2ixc43jjng9"))))
(properties
`((upstream-name . "GenomicRanges")
(r-repository . bioconductor)))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-genomeinfodb" ,r-genomeinfodb)
("r-xvector" ,r-xvector)))
(home-page "http://bioconductor.org/packages/GenomicRanges")
(synopsis "Representation and manipulation of genomic intervals")
(description
"This package provides tools to efficiently represent and manipulate
genomic annotations and alignments is playing a central role when it comes to
analyzing high-throughput sequencing data (a.k.a. NGS data). The
GenomicRanges package defines general purpose containers for storing and
manipulating genomic intervals and variables defined along a genome.")
(license license:artistic2.0)))
(define-public r-qtl
(package
(name "r-qtl")