gnu: Add mantis.
* gnu/packages/bioinformatics.scm (mantis): New variable.
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;;; GNU Guix --- Functional package management for GNU
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;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2014, 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
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;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
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;;; Copyright © 2015, 2016, 2017, 2018 Ben Woodcroft <donttrustben@gmail.com>
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;;; Copyright © 2015, 2016, 2017, 2018 Ben Woodcroft <donttrustben@gmail.com>
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;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl>
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;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl>
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;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
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;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
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@ -13285,6 +13285,39 @@ descriptive settings file. The result is a set of comprehensive, interactive
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HTML reports with interesting findings about your samples.")
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HTML reports with interesting findings about your samples.")
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(license license:gpl3+)))
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(license license:gpl3+)))
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(define-public mantis
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(let ((commit "4ffd171632c2cb0056a86d709dfd2bf21bc69b84")
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(revision "1"))
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(package
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(name "mantis")
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(version (git-version "0" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/splatlab/mantis.git")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0iqbr0dhmlc8mzpirmm2s4pkzkwdgrcx50yx6cv3wlr2qi064p55"))))
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(build-system cmake-build-system)
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(arguments '(#:tests? #f)) ; there are none
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(inputs
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`(("sdsl-lite" ,sdsl-lite)
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("openssl" ,openssl)
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("zlib" ,zlib)))
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(home-page "https://github.com/splatlab/mantis")
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(synopsis "Large-scale sequence-search index data structure")
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(description "Mantis is a space-efficient data structure that can be
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used to index thousands of raw-read genomics experiments and facilitate
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large-scale sequence searches on those experiments. Mantis uses counting
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quotient filters instead of Bloom filters, enabling rapid index builds and
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queries, small indexes, and exact results, i.e., no false positives or
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negatives. Furthermore, Mantis is also a colored de Bruijn graph
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representation, so it supports fast graph traversal and other topological
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analyses in addition to large-scale sequence-level searches.")
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(license license:bsd-3))))
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(define-public r-diversitree
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(define-public r-diversitree
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(package
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(package
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(name "r-diversitree")
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(name "r-diversitree")
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