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gnu: r-rhdf5lib: Update to 1.2.1. 

* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.2.1.
[arguments]: Adjust substitutions.
master
Ricardo Wurmus 2018-06-02 12:16:03 +02:00
parent 0840352835
commit e9c417361e
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1 changed files with 7 additions and 8 deletions
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gnu/packages/bioinformatics.scm
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@ -10724,14 +10724,14 @@ block processing.")
(define-public r-rhdf5lib
(package
(name "r-rhdf5lib")
(version "1.0.0")
(version "1.2.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Rhdf5lib" version))
(sha256
(base32
"0kkc4rprjbqn2wvbx4d49kk9l91vihccxbl4843qr1wqk6v33r1w"))))
"1y59acac6v8hrhv84gghn9ifsni9xxxacaj177rrl4frmkrz4x3c"))))
(properties `((upstream-name . "Rhdf5lib")))
(build-system r-build-system)
(arguments
@ -10742,10 +10742,10 @@ block processing.")
(for-each delete-file '("configure" "configure.ac"))
;; Do not make other packages link with the proprietary libsz.
(substitute* "R/zzz.R"
(("'%s/libhdf5_cpp.a %s/libhdf5.a %s/libsz.a'")
"'%s/libhdf5_cpp.a %s/libhdf5.a %s/libhdf5.a'")
(("'%s/libhdf5.a %s/libsz.a'")
"'%s/libhdf5.a %s/libhdf5.a'"))
(("'%s/libhdf5_cpp.a %s/libhdf5.a %s/libsz.a -lz'")
"'%s/libhdf5_cpp.a %s/libhdf5.a %s/libhdf5.a -lz'")
(("'%s/libhdf5.a %s/libsz.a -lz'")
"'%s/libhdf5.a %s/libhdf5.a -lz'"))
(with-directory-excursion "src"
(invoke "tar" "xvf" (assoc-ref inputs "hdf5-source"))
(rename-file (string-append "hdf5-" ,(package-version hdf5))
@ -10772,8 +10772,7 @@ block processing.")
(("HDF5_INCLUDE=.*") "HDF5_INCLUDE=./hdf5/src\n")
;; szip is non-free software
(("cp \\$\\{SZIP_LIB\\}.*") "")
(("PKG_LIBS = \\$\\{HDF5_LIB\\} \\$\\{SZIP_LIB\\}")
"PKG_LIBS = ${HDF5_LIB}\n")))
(("\\$\\{USER_LIB_DIR\\}libsz.a") "")))
#t)))))
(inputs
`(("zlib" ,zlib)))