gnu: r-seurat: Update to 2.1.0.

* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.1.0.
[propagated-inputs]: Add r-diffusionmap, r-dtw, r-ggjoy, r-hmisc, r-ica,
r-mass, r-matrix, r-nmf, r-plotly, r-sdmtools, r-tidyr; remove r-plyr,
r-rcppeigen, r-fastica.

gnu/packages/bioinformatics.scm

@@ -9397,27 +9397,20 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.")
     (license license:artistic2.0)))
 
 (define-public r-seurat
-  ;; Source releases are only made for new x.0 versions.  All newer versions
-  ;; are only released as pre-built binaries.  At the time of this writing the
-  ;; latest binary release is 1.4.0.12, which is equivalent to this commit.
-  (let ((commit "fccb77d1452c35ee47e47ebf8e87bddb59f3b08d")
-        (revision "1"))
   (package
     (name "r-seurat")
-      (version (string-append "1.4.0.12-" revision "." (string-take commit 7)))
+    (version "2.1.0")
     (source (origin
-                (method git-fetch)
+              (method url-fetch)
-                (uri (git-reference
+              (uri (cran-uri "Seurat" version))
-                      (url "https://github.com/satijalab/seurat")
-                      (commit commit)))
-                (file-name (string-append name "-" version "-checkout"))
               (sha256
                (base32
-                  "101wq3aqrdmbfi3lqmq4iivk9iwbf10d4z216ss25hf7n9091cyl"))
+                "1hqaq6bciikrsyw157w8fn4jw885air7xbkxrmism93rp4qx483x"))
               ;; Delete pre-built jar.
               (snippet
                '(begin (delete-file "inst/java/ModularityOptimizer.jar")
                        #t))))
+    (properties `((upstream-name . "Seurat")))
     (build-system r-build-system)
     (arguments
      `(#:phases
@@ -9427,7 +9420,6 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.")
              (let ((classesdir "tmp-classes"))
                (setenv "JAVA_HOME" (assoc-ref inputs "jdk"))
                (mkdir classesdir)
-
                (with-output-to-file "manifest"
                  (lambda _
                    (display "Manifest-Version: 1.0
@@ -9444,30 +9436,38 @@ Main-Class: ModularityOptimizer\n")))
      `(("r-ape" ,r-ape)
        ("r-caret" ,r-caret)
        ("r-cowplot" ,r-cowplot)
+       ("r-diffusionmap" ,r-diffusionmap)
        ("r-dplyr" ,r-dplyr)
-         ("r-fastica" ,r-fastica)
+       ("r-dtw" ,r-dtw)
        ("r-fnn" ,r-fnn)
        ("r-fpc" ,r-fpc)
        ("r-gdata" ,r-gdata)
+       ("r-ggjoy" ,r-ggjoy)
        ("r-ggplot2" ,r-ggplot2)
        ("r-gplots" ,r-gplots)
        ("r-gridextra" ,r-gridextra)
+       ("r-hmisc" ,r-hmisc)
+       ("r-ica" ,r-ica)
        ("r-igraph" ,r-igraph)
        ("r-irlba" ,r-irlba)
        ("r-lars" ,r-lars)
+       ("r-mass" ,r-mass)
+       ("r-matrix" ,r-matrix)
        ("r-mixtools" ,r-mixtools)
+       ("r-nmf" ,r-nmf)
        ("r-pbapply" ,r-pbapply)
-         ("r-plyr" ,r-plyr)
+       ("r-plotly" ,r-plotly)
        ("r-ranger" ,r-ranger)
        ("r-rcolorbrewer" ,r-rcolorbrewer)
        ("r-rcpp" ,r-rcpp)
-         ("r-rcppeigen" ,r-rcppeigen)
        ("r-rcppprogress" ,r-rcppprogress)
        ("r-reshape2" ,r-reshape2)
        ("r-rocr" ,r-rocr)
        ("r-rtsne" ,r-rtsne)
+       ("r-sdmtools" ,r-sdmtools)
        ("r-stringr" ,r-stringr)
        ("r-tclust" ,r-tclust)
+       ("r-tidyr" ,r-tidyr)
        ("r-tsne" ,r-tsne)
        ("r-vgam" ,r-vgam)))
     (home-page "http://www.satijalab.org/seurat")
@@ -9479,7 +9479,7 @@ analytical techniques, including the identification of highly variable genes,
 dimensionality reduction; PCA, ICA, t-SNE, standard unsupervised clustering
 algorithms; density clustering, hierarchical clustering, k-means, and the
 discovery of differentially expressed genes and markers.")
-      (license license:gpl3))))
+    (license license:gpl3)))
 
 (define-public r-aroma-light
   (package