gnu: Add porechop.

* gnu/packages/bioinformatics.scm (porechop): New variable.
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pimi 2018-09-30 14:08:42 -04:00 committed by Leo Famulari
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commit f2bc53af70
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@ -13869,3 +13869,33 @@ single-cell transcriptomic map of the human and mouse pancreas reveals inter-
and intra-cell population structure.\" Baron et al. Cell Systems (2016) and intra-cell population structure.\" Baron et al. Cell Systems (2016)
@url{https://www.ncbi.nlm.nih.gov/pubmed/27667365}.") @url{https://www.ncbi.nlm.nih.gov/pubmed/27667365}.")
(license license:gpl2+)))) (license license:gpl2+))))
(define-public porechop
;; The recommended way to install is to clone the git repository
;; https://github.com/rrwick/Porechop#installation
(let ((commit "289d5dca4a5fc327f97b3f8cecb68ecaf1014861")
(revision "1"))
(package
(name "porechop")
(version (git-version "0.2.3" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/rrwick/Porechop.git")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "05ps43gig0d3ia9x5lj84lb00hbsl6ba9n7y7jz927npxbr2ym23"))))
(build-system python-build-system)
(home-page "https://github.com/rrwick/porechop")
(synopsis "Finding, trimming or splitting adapters, in Oxford Nanopore reads")
(description
"The porechop package is a tool for finding and removing adapters from Oxford
Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read
has an adapter in its middle, it is treated as chimeric and chopped into
separate reads. Porechop performs thorough alignments to effectively find
adapters, even at low sequence identity. Porechop also supports demultiplexing
of Nanopore reads that were barcoded with the Native Barcoding Kit, PCR
Barcoding Kit or Rapid Barcoding Kit.")
(license license:gpl3+))))