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Merge branch 'master' into staging

This commit is contained in:
Marius Bakke 2019-03-06 16:31:58 +01:00
parent e21bd8dff8 7016e62070
commit f339df425e
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33 changed files with 1092 additions and 397 deletions
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4
gnu/artwork.scm
View File

@ -29,7 +29,7 @@
;;; Code:
(define %artwork-repository
(let ((commit "e951905f79dcc92fba9cd05d9190afa3ee2d1d50"))
(let ((commit "b975164c19c9c0f5d91e5731ec1683e7510c1326"))
(origin
(method git-fetch)
(uri (git-reference
@ -39,6 +39,6 @@
"-checkout"))
(sha256
(base32
"1d79ackvs3bqk43ff91457qmdb6g4nwfknzs3dyrhni1ynk1i976")))))
"1fad7az077q9ds3jhp00jfsr8rfw4ws042wmnai52k7jv4kbxwyf")))))
;;; artwork.scm ends here

19
gnu/build/linux-modules.scm
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@ -25,6 +25,7 @@
#:use-module (rnrs io ports)
#:use-module (rnrs bytevectors)
#:use-module (srfi srfi-1)
#:use-module (srfi srfi-11)
#:use-module (srfi srfi-26)
#:use-module (ice-9 vlist)
#:use-module (ice-9 match)
@ -105,7 +106,8 @@ contains module names, not actual file names."
(char-set-complement (char-set #\space #\tab)))
(define (module-soft-dependencies file)
"Return a list of (cons section soft-dependency) of module FILE."
"Return the list of modules that can be preloaded, and then the list of
modules that can be postloaded, of the soft dependencies of module FILE."
;; TEXT: "pre: baz blubb foo post: bax bar"
(define (parse-softdep text)
(let loop ((value '())
@ -120,13 +122,24 @@ contains module names, not actual file names."
value))))
;; Note: Multiple 'softdep sections are allowed.
(let ((info (modinfo-section-contents file)))
(concatenate
(let* ((info (modinfo-section-contents file))
(entries (concatenate
(filter-map (match-lambda
(('softdep . value)
(parse-softdep value))
(_ #f))
(modinfo-section-contents file)))))
(let-values (((pres posts)
(partition (match-lambda
(("pre" . _) #t)
(("post" . _) #f))
entries)))
(values (map (match-lambda
((_ . value) value))
pres)
(map (match-lambda
((_ . value) value))
posts)))))
(define (module-aliases file)
"Return the list of aliases of module FILE."

1
gnu/local.mk
View File

@ -1227,6 +1227,7 @@ dist_patch_DATA = \
%D%/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch \
%D%/packages/patches/rust-bootstrap-stage0-test.patch \
%D%/packages/patches/rust-coresimd-doctest.patch \
%D%/packages/patches/rust-1.30-gdb-llvm.patch \
%D%/packages/patches/rust-reproducible-builds.patch \
%D%/packages/patches/rxvt-unicode-escape-sequences.patch \
%D%/packages/patches/scalapack-blacs-mpi-deprecations.patch \

6
gnu/packages/admin.scm
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@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2013 Cyril Roelandt <tipecaml@gmail.com>
;;; Copyright © 2014, 2015, 2016, 2018 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2014, 2015, 2016, 2017, 2018 Eric Bavier <bavier@member.fsf.org>
@ -1143,7 +1143,9 @@ WLAN driver.
This package provides the 'wpa_supplicant' daemon and the 'wpa_cli' command.")
;; In practice, this is linked against Readline, which makes it GPLv3+.
(license license:bsd-3)))
(license license:bsd-3)
(properties `((cpe-name . "wpa_supplicant")))))
(define-public wpa-supplicant
(package (inherit wpa-supplicant-minimal)

26
gnu/packages/bioconductor.scm
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@ -170,6 +170,32 @@ Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by
default." )
(license license:artistic2.0)))
(define-public r-org-dr-eg-db
(package
(name "r-org-dr-eg-db")
(version "3.7.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"org.Dr.eg.db_" version ".tar.gz"))
(sha256
(base32
"1xs5wsbcpy0iwbjyiv7fax57djqc529ai5fk1qfsdcvlja3cpglx"))))
(properties
`((upstream-name . "org.Dr.eg.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://www.bioconductor.org/packages/org.Dr.eg.db/")
(synopsis "Annotation for Zebrafish")
(description
"This package provides genome wide annotations for Zebrafish, primarily
based on mapping using Entrez Gene identifiers.")
(license license:artistic2.0)))
(define-public r-genelendatabase
(package
(name "r-genelendatabase")

184
gnu/packages/bioinformatics.scm
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@ -84,6 +84,7 @@
#:use-module (gnu packages jemalloc)
#:use-module (gnu packages dlang)
#:use-module (gnu packages linux)
#:use-module (gnu packages lisp)
#:use-module (gnu packages logging)
#:use-module (gnu packages machine-learning)
#:use-module (gnu packages man)
@ -1384,6 +1385,46 @@ gapped, local, and paired-end alignment modes.")
(supported-systems '("x86_64-linux"))
(license license:gpl3+)))
(define-public bowtie1
(package
(name "bowtie1")
(version "1.2.2")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/bowtie-bio/bowtie/"
version "/bowtie-" version "-src.zip"))
(sha256
(base32
"1jl2cj9bz8lwz8dwnxbycn8yp8g4kky62fkcxifyf1ri0y6n2vc0"))
(modules '((guix build utils)))
(snippet
'(substitute* "Makefile"
;; replace BUILD_HOST and BUILD_TIME for deterministic build
(("-DBUILD_HOST=.*") "-DBUILD_HOST=\"\\\"guix\\\"\"")
(("-DBUILD_TIME=.*") "-DBUILD_TIME=\"\\\"0\\\"\"")))))
(build-system gnu-build-system)
(arguments
'(#:tests? #f ; no "check" target
#:make-flags
(list "all"
(string-append "prefix=" (assoc-ref %outputs "out")))
#:phases
(modify-phases %standard-phases
(delete 'configure))))
(inputs
`(("tbb" ,tbb)
("zlib" ,zlib)))
(supported-systems '("x86_64-linux"))
(home-page "http://bowtie-bio.sourceforge.net/index.shtml")
(synopsis "Fast aligner for short nucleotide sequence reads")
(description
"Bowtie is a fast, memory-efficient short read aligner. It aligns short
DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp
reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to
keep its memory footprint small: typically about 2.2 GB for the human
genome (2.9 GB for paired-end).")
(license license:artistic2.0)))
(define-public tophat
(package
(name "tophat")
@ -6240,6 +6281,48 @@ sequence.")
(supported-systems '("i686-linux" "x86_64-linux"))
(license license:bsd-3)))
(define-public r-scde
(package
(name "r-scde")
(version "1.99.2")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/hms-dbmi/scde.git")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32
"10na2gyka24mszdxf92wz9h2c13hdf1ww30c68gfsw53lvvhhhxb"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rcpp" ,r-rcpp)
("r-rcpparmadillo" ,r-rcpparmadillo)
("r-mgcv" ,r-mgcv)
("r-rook" ,r-rook)
("r-rjson" ,r-rjson)
("r-cairo" ,r-cairo)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-edger" ,r-edger)
("r-quantreg" ,r-quantreg)
("r-nnet" ,r-nnet)
("r-rmtstat" ,r-rmtstat)
("r-extremes" ,r-extremes)
("r-pcamethods" ,r-pcamethods)
("r-biocparallel" ,r-biocparallel)
("r-flexmix" ,r-flexmix)))
(home-page "https://hms-dbmi.github.io/scde/")
(synopsis "R package for analyzing single-cell RNA-seq data")
(description "The SCDE package implements a set of statistical methods for
analyzing single-cell RNA-seq data. SCDE fits individual error models for
single-cell RNA-seq measurements. These models can then be used for
assessment of differential expression between groups of cells, as well as
other types of analysis. The SCDE package also contains the pagoda framework
which applies pathway and gene set overdispersion analysis to identify aspects
of transcriptional heterogeneity among single cells.")
;; See https://github.com/hms-dbmi/scde/issues/38
(license license:gpl2)))
(define-public r-centipede
(package
(name "r-centipede")
@ -7127,28 +7210,6 @@ checks on R packages that are to be submitted to the Bioconductor repository.")
that accept short and long options.")
(license license:gpl2+)))
(define-public r-dnacopy
(package
(name "r-dnacopy")
(version "1.56.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "DNAcopy" version))
(sha256
(base32
"04cqdqxhva66xwh1s2vffi56b9fcrqd4slcrvqasj5lp2rkjli82"))))
(properties
`((upstream-name . "DNAcopy")))
(build-system r-build-system)
(inputs
`(("gfortran" ,gfortran)))
(home-page "https://bioconductor.org/packages/DNAcopy")
(synopsis "Implementation of a circular binary segmentation algorithm")
(description "This package implements the circular binary segmentation (CBS)
algorithm to segment DNA copy number data and identify genomic regions with
abnormal copy number.")
(license license:gpl2+)))
(define-public r-s4vectors
(package
(name "r-s4vectors")
@ -11613,7 +11674,7 @@ Browser.")
(define-public bismark
(package
(name "bismark")
(version "0.19.1")
(version "0.20.1")
(source
(origin
(method git-fetch)
@ -11623,18 +11684,25 @@ Browser.")
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
"0yb5l36slwg02fp4b1jdlplgljcsxgqfzvzihzdnphd87dghcc84"))
(snippet
'(begin
;; highcharts.js is non-free software. The code is available under
;; CC-BY-NC or proprietary licenses only.
(delete-file "bismark_sitrep/highcharts.js")
#t))))
"0xchm3rgilj6vfjnyzfzzymfd7djr64sbrmrvs3njbwi66jqbzw9"))))
(build-system perl-build-system)
(arguments
`(#:tests? #f ; there are no tests
#:modules ((guix build utils)
(ice-9 popen)
(srfi srfi-26)
(guix build perl-build-system))
#:phases
(modify-phases %standard-phases
;; The bundled plotly.js is minified.
(add-after 'unpack 'replace-plotly.js
(lambda* (#:key inputs #:allow-other-keys)
(let* ((file (assoc-ref inputs "plotly.js"))
(installed "plotly/plotly.js"))
(let ((minified (open-pipe* OPEN_READ "uglify-js" file)))
(call-with-output-file installed
(cut dump-port minified <>))))
#t))
(delete 'configure)
(delete 'build)
(replace 'install
@ -11653,10 +11721,11 @@ Browser.")
"deduplicate_bismark"
"filter_non_conversion"
"bam2nuc"
"bismark2summary")))
"bismark2summary"
"NOMe_filtering")))
(substitute* "bismark2report"
(("\\$RealBin/bismark_sitrep")
(string-append share "/bismark_sitrep")))
(("\\$RealBin/plotly")
(string-append share "/plotly")))
(mkdir-p share)
(mkdir-p docdir)
(mkdir-p bin)
@ -11665,8 +11734,8 @@ Browser.")
(for-each (lambda (file) (install-file file docdir))
docs)
(copy-recursively "Docs/Images" (string-append docdir "/Images"))
(copy-recursively "bismark_sitrep"
(string-append share "/bismark_sitrep"))
(copy-recursively "plotly"
(string-append share "/plotly"))
;; Fix references to gunzip
(substitute* (map (lambda (file)
@ -11677,7 +11746,18 @@ Browser.")
"/bin/gunzip -c")))
#t))))))
(inputs
`(("gzip" ,gzip)))
`(("gzip" ,gzip)
("perl-carp" ,perl-carp)
("perl-getopt-long" ,perl-getopt-long)))
(native-inputs
`(("plotly.js"
,(origin
(method url-fetch)
(uri (string-append "https://raw.githubusercontent.com/plotly/plotly.js/"
"v1.39.4/dist/plotly.js"))
(sha256
(base32 "138mwsr4nf5qif4mrxx286mpnagxd1xwl6k8aidrjgknaqg88zyr"))))
("uglify-js" ,uglify-js)))
(home-page "http://www.bioinformatics.babraham.ac.uk/projects/bismark/")
(synopsis "Map bisulfite treated sequence reads and analyze methylation")
(description "Bismark is a program to map bisulfite treated sequencing
@ -13135,6 +13215,38 @@ descriptive settings file. The result is a set of comprehensive, interactive
HTML reports with interesting findings about your samples.")
(license license:gpl3+)))
(define-public genrich
(package
(name "genrich")
(version "0.5")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/jsh58/Genrich.git")
(commit (string-append "v" version))))
(sha256
(base32
"0x0q6z0208n3cxzqjla4rgjqpyqgwpmz27852lcvzkzaigymq4zp"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; there are none
#:phases
(modify-phases %standard-phases
(delete 'configure)
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(install-file "Genrich" (string-append (assoc-ref outputs "out") "/bin"))
#t)))))
(inputs
`(("zlib" ,zlib)))
(home-page "https://github.com/jsh58/Genrich")
(synopsis "Detecting sites of genomic enrichment")
(description "Genrich is a peak-caller for genomic enrichment
assays (e.g. ChIP-seq, ATAC-seq). It analyzes alignment files generated
following the assay and produces a file detailing peaks of significant
enrichment.")
(license license:expat)))
(define-public mantis
(let ((commit "4ffd171632c2cb0056a86d709dfd2bf21bc69b84")
(revision "1"))

4
gnu/packages/emacs-xyz.scm
View File

@ -13166,7 +13166,7 @@ opposed to character-based).")
(define-public emacs-disk-usage
(package
(name "emacs-disk-usage")
(version "1.2.0")
(version "1.3.0")
(home-page "https://gitlab.com/Ambrevar/emacs-disk-usage")
(source
(origin
@ -13177,7 +13177,7 @@ opposed to character-based).")
".el"))
(sha256
(base32
"13n6bsrz8q07fl6sd7wi5zvf01m5xw11hmrpdz7wcn49v6vs3whl"))))
"0ky6c34z7c6hd4yvcrcsidkfk2kvffkg63v02vch2i6hg1n6n028"))))
(build-system emacs-build-system)
(synopsis "Sort and browse disk usage listings with Emacs")
(description "Disk Usage is a file system analyzer: it offers a tabulated

6
gnu/packages/emacs.scm
View File

@ -251,8 +251,10 @@ editor (without an X toolkit)" )
(build-system gnu-build-system)
(inputs (append `(("inotify-tools" ,inotify-tools))
(alist-delete "gtk+" (package-inputs emacs))))
(arguments (append '(#:configure-flags '("--with-x-toolkit=no"))
(package-arguments emacs)))))
(arguments
`(,@(substitute-keyword-arguments (package-arguments emacs)
((#:configure-flags cf)
`(cons "--with-x-toolkit=no" ,cf)))))))
(define-public guile-emacs
(let ((commit "41120e0f595b16387eebfbf731fff70481de1b4b")

41
gnu/packages/fonts.scm
View File

@ -344,33 +344,23 @@ Biolinum is available in both Regular and Bold weights.")
(define-public font-terminus
(package
(name "font-terminus")
(version "4.40")
(version "4.47")
(source
(origin
(method url-fetch)
(uri (string-append
"mirror://sourceforge/terminus-font/terminus-font-"
version
"/terminus-font-"
version
".tar.gz"))
(uri (string-append "mirror://sourceforge/terminus-font/terminus-font-"
version "/terminus-font-" version ".tar.gz"))
(sha256
(base32
"0487cyx5h1f0crbny5sg73a22gmym5vk1i7646gy7hgiscj2rxb4"))))
(base32 "15qjcpalcxjiwsjgjg5k88vkwp56cs2nnx4ghya6mqp4i1c206qg"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)
("perl" ,perl)
("bdftopcf" ,bdftopcf)
`(("bdftopcf" ,bdftopcf)
("font-util" ,font-util)
("mkfontdir" ,mkfontdir)))
("mkfontdir" ,mkfontdir)
("pkg-config" ,pkg-config)
("python" ,python)))
(arguments
`(#:configure-flags (list
;; install fonts into subdirectory of package output
;; instead of font-util-?.?.?/share/fonts/X11
(string-append "--with-fontrootdir="
%output "/share/fonts/X11"))
#:tests? #f)) ;; No test target in tarball
`(#:tests? #f)) ; no test target in tarball
(home-page "http://terminus-font.sourceforge.net/")
(synopsis "Simple bitmap programming font")
(description "Terminus Font is a clean, fixed-width bitmap font, designed
@ -505,12 +495,11 @@ variants.")
"mirror://sourceforge/wqy/wqy-zenhei/" version
"%20%28Fighting-state%20RC1%29/wqy-zenhei-"
version ".tar.gz"))
(file-name (string-append "wqy-zenhei-" version ".tar.gz"))
(sha256
(base32
"1mkmxq8g2hjcglb3zajfqj20r4r88l78ymsp2xyl5yav8w3f7dz4"))))
(build-system font-build-system)
(home-page "http://wenq.org/wqy2/")
(home-page "https://wenq.org/wqy2/")
(synopsis "CJK font")
(description
"WenQuanYi Zen Hei is a Hei-Ti style (sans-serif type) Chinese outline
@ -522,7 +511,7 @@ this font is over 35,000, including over 21,000 Chinese Hanzi. This font has
full coverage of the GBK (CP936) charset, CJK Unified Ideographs, as well as
the code-points needed for zh_cn, zh_sg, zh_tw, zh_hk, zh_mo, ja (Japanese) and
ko (Korean) locales for @code{fontconfig}.")
;; GPLv2 with font embedding exception
;; GPLv2 with font embedding exception.
(license license:gpl2)))
(define-public font-wqy-microhei
@ -607,13 +596,13 @@ Heros, Pagella, Schola, Termes.")
(source (origin
(method url-fetch)
(uri (string-append
"http://www.marksimonson.com/assets/content/fonts/"
"https://www.marksimonson.com/assets/content/fonts/"
"AnonymousPro-" version ".zip"))
(sha256
(base32
"1asj6lykvxh46czbal7ymy2k861zlcdqpz8x3s5bbpqwlm3mhrl6"))))
(build-system font-build-system)
(home-page "http://www.marksimonson.com/fonts/view/anonymous-pro")
(home-page "https://www.marksimonson.com/fonts/view/anonymous-pro")
(synopsis "Fixed-width fonts designed with coding in mind")
(description "Anonymous Pro is a family of four fixed-width fonts designed
with coding in mind. Anonymous Pro features an international, Unicode-based
@ -948,7 +937,7 @@ Sans Pro family.")
(define-public font-fira-code
(package
(name "font-fira-code")
(version "1.205")
(version "1.206")
(source (origin
(method url-fetch/zipbomb)
(uri (string-append "https://github.com/tonsky/FiraCode/releases/"
@ -956,7 +945,7 @@ Sans Pro family.")
"/FiraCode_" version ".zip"))
(sha256
(base32
"13bxgf59g6fw5191xclcjzn22hj8jk9k5jjwf7vz07mpjbgadcl5"))))
"02r1lcp0c9135ps71v66wdvbsrcxwirrp0blqsa1xbjkkq2rwgj3"))))
(build-system font-build-system)
(home-page "https://mozilla.github.io/Fira/")
(synopsis "Monospaced font with programming ligatures")

19
gnu/packages/games.scm
View File

@ -4411,7 +4411,7 @@ fish. The whole game is accompanied by quiet, comforting music.")
(define-public crawl
(package
(name "crawl")
(version "0.22.1")
(version "0.23.1")
(source
(origin
(method url-fetch)
@ -4425,7 +4425,7 @@ fish. The whole game is accompanied by quiet, comforting music.")
version "-nodeps.tar.xz")))
(sha256
(base32
"1qc90wwbxvjzqq66n8kfr0a2ny7sfvv2n84si67jiv2887d0ws6k"))
"0c3mx49kpz6i2xvv2dwsaj9s7mm4mif1h2qdkfyi80lv2j1ay51h"))
(patches (search-patches "crawl-upgrade-saves.patch"))))
(build-system gnu-build-system)
(inputs
@ -4437,6 +4437,8 @@ fish. The whole game is accompanied by quiet, comforting music.")
`(("bison" ,bison)
("flex" ,flex)
("perl" ,perl)
("python" ,python)
("python-pyyaml" ,python-pyyaml)
("pkg-config" ,pkg-config)))
(arguments
'(#:make-flags
@ -4452,16 +4454,19 @@ fish. The whole game is accompanied by quiet, comforting music.")
"-Csource"))
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'patch-python
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "source/util/species-gen.py"
(("python") "python3"))
#t))
(delete 'configure)
(delete 'check)
;; Test cases require the source to be rebuild with the -DDEBUG define.
;; Do 'check before 'build to avoid a 3rd build on make install.
(add-before 'build 'check
(replace 'check
(lambda* (#:key inputs outputs make-flags #:allow-other-keys)
(setenv "HOME" (getcwd))
;; Fake a terminal for the test cases.
(setenv "TERM" "xterm-256color")
(apply invoke "make" "debug" "test"
;; Run the tests that don't require a debug build.
(apply invoke "make" "nondebugtest"
(format #f "-j~d" (parallel-job-count))
;; Force command line build for test cases.
(append make-flags '("GAME=crawl" "TILES="))))))))

4
gnu/packages/gimp.scm
View File

@ -80,7 +80,7 @@ provided, as well as a framework to add new color models and data types.")
(define-public gegl
(package
(name "gegl")
(version "0.4.12")
(version "0.4.14")
(source (origin
(method url-fetch)
(uri (list (string-append "https://download.gimp.org/pub/gegl/"
@ -88,7 +88,7 @@ provided, as well as a framework to add new color models and data types.")
"/gegl-" version ".tar.bz2")))
(sha256
(base32
"0ljqxc4iyy2hrj31pxcy1xp4xm5zbx1nigqisphmg4p8mcz2jrz9"))))
"00crhngwi07f5b9x77kx5p7p4cl6l5g6glpz9rqv7pfqk62xa0ac"))))
(build-system gnu-build-system)
(arguments
'(#:configure-flags '("LDFLAGS=-lm")))

7
gnu/packages/gl.scm
View File

@ -9,7 +9,7 @@
;;; Copyright © 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
;;; Copyright © 2017, 2018, 2019 Rutger Helling <rhelling@mykolab.com>
;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
;;;
@ -718,7 +718,7 @@ mixed vector/bitmap output.")
(define-public virtualgl
(package
(name "virtualgl")
(version "2.6")
(version "2.6.1")
(source
(origin
(method git-fetch)
@ -727,8 +727,7 @@ mixed vector/bitmap output.")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32
"0di2igj2bhwb153fndgxks7y57pyhp0gj31n47j93gb7lxc9qcck"))))
(base32 "04fdwm6mz76lw4iwd5m7yxjfhpa0rpxd357bv5smk5lclnlbz1bv"))))
(arguments
`(#:tests? #f ; no tests are available
#:configure-flags (list

8
gnu/packages/gnome.scm
View File

@ -6708,16 +6708,16 @@ the Moka icon theme.")
(define-public folks
(package
(name "folks")
(version "0.11.2")
(version "0.11.4")
(source (origin
(method url-fetch)
(uri (string-append
"mirror://gnome/sources/" name "/"
"mirror://gnome/sources/folks/"
(version-major+minor version) "/"
name "-" version ".tar.xz"))
"folks-" version ".tar.xz"))
(sha256
(base32
"1f51albxgfqxbax57i3pcgv2fx7i419xaapzdvldas6gw100ma1m"))))
"16hqh2gxlbx0b0hgq216hndr1m72vj54jvryzii9zqkk0g9kxc57"))))
(build-system glib-or-gtk-build-system)
(inputs
`(("bdb" ,bdb)

4
gnu/packages/golang.scm
View File

@ -668,7 +668,7 @@ termination.")
(define-public go-github.com-jtolds-gls
(package
(name "go-github.com-jtolds-gls")
(version "4.2.1")
(version "4.20")
(source (origin
(method git-fetch)
(uri (git-reference
@ -677,7 +677,7 @@ termination.")
(file-name (git-file-name name version))
(sha256
(base32
"1vm37pvn0k4r6d3m620swwgama63laz8hhj3pyisdhxwam4m2g1h"))))
"1k7xd2q2ysv2xsh373qs801v6f359240kx0vrl0ydh7731lngvk6"))))
(build-system go-build-system)
(arguments
'(#:import-path "github.com/jtolds/gls"))

57
gnu/packages/guile-xyz.scm
View File

@ -49,9 +49,11 @@
#:use-module (gnu packages disk)
#:use-module (gnu packages ed)
#:use-module (gnu packages emacs)
#:use-module (gnu packages emacs-xyz)
#:use-module (gnu packages gawk)
#:use-module (gnu packages gettext)
#:use-module (gnu packages gl)
#:use-module (gnu packages gnome)
#:use-module (gnu packages gperf)
#:use-module (gnu packages guile)
#:use-module (gnu packages hurd)
@ -2000,3 +2002,58 @@ format is also supported.")
"This package provides a simple SVG-based picture language for Guile.
The picture values can directly be displayed in Geiser.")
(license license:lgpl3+))))
(define-public guile-studio
(let ((commit "e2da64f014942a73996286c4abe3c3b1f8bd220c")
(revision "1"))
(package
(name "guile-studio")
(version (git-version "0" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://git.elephly.net/software/guile-studio.git")
(commit commit)))
(sha256
(base32
"10v3kw41bzd8c2a6vxgrwbvl216d0k8f5s9h6pm8hahpd03jl7lm"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; there are none
#:phases
(modify-phases %standard-phases
(delete 'configure)
(replace 'build
(lambda* (#:key source inputs outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin/"))
(share (string-append out "/share/")))
(mkdir-p share)
(mkdir-p bin)
(apply invoke "guile" "-s" "guile-studio-configure.scm"
out
(assoc-ref inputs "emacs")
(assoc-ref inputs "guile-picture-language")
(string-append (assoc-ref inputs "adwaita-icon-theme")
"/share/icons/Adwaita/")
(map cdr inputs))
#t)))
(delete 'install))))
(inputs
`(("guile" ,guile-2.2)
("guile-picture-language" ,guile-picture-language)
("emacs" ,emacs)
("emacs-geiser" ,emacs-geiser)
("emacs-company" ,emacs-company)
("emacs-flycheck" ,emacs-flycheck)
("emacs-smart-mode-line" ,emacs-smart-mode-line)
("emacs-paren-face" ,emacs-paren-face)
("adwaita-icon-theme" ,adwaita-icon-theme)))
(home-page "https://gnu.org/software/guile")
(synopsis "IDE for Guile")
(description
"This is Emacs with a few settings that make working with Guile easier
for people new to Emacs. Features include: CUA mode, Geiser, tool bar icons
to evaluate Guile buffers, support for Guile's very own picture language, code
completion, a simple mode line, etc.")
(license license:gpl3+))))

37
gnu/packages/java.scm
View File

@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
;;; Copyright © 2016, 2017 Roel Janssen <roel@gnu.org>
;;; Copyright © 2017 Carlo Zancanaro <carlo@zancanaro.id.au>
@ -5452,7 +5452,7 @@ specification.")
(define-public java-eclipse-equinox-common
(package
(name "java-eclipse-equinox-common")
(version "3.8.0")
(version "3.10.200")
(source (origin
(method url-fetch)
(uri (string-append "https://repo1.maven.org/maven2/"
@ -5461,7 +5461,7 @@ specification.")
version "-sources.jar"))
(sha256
(base32
"12aazpkgw46r1qj0pr421jzwhbmsizd97r37krd7njnbrdgfzksc"))))
"1yn8ij6xsljlf35sr2l7wvyvc0ss4n1rv0ry5zkgb49dj4hyrqrj"))))
(build-system ant-build-system)
(arguments
`(#:tests? #f ; no tests included
@ -5611,7 +5611,7 @@ the module @code{org.eclipse.equinox.preferences}.")
(define-public java-eclipse-core-runtime
(package
(name "java-eclipse-core-runtime")
(version "3.12.0")
(version "3.15.100")
(source (origin
(method url-fetch)
(uri (string-append "https://repo1.maven.org/maven2/"
@ -5620,7 +5620,7 @@ the module @code{org.eclipse.equinox.preferences}.")
version "-sources.jar"))
(sha256
(base32
"16mkf8jgj35pgzms7w1gyfq0gfm4ixw6c5xbbxzdj1la56c758ya"))))
"0l8xayacsbjvz5hypx2fv47vpw2n4dspamcfb3hx30x9hj8vmg7r"))))
(build-system ant-build-system)
(arguments
`(#:tests? #f ; no tests included
@ -5759,7 +5759,7 @@ the module @code{org.eclipse.ant.core}.")
(define-public java-eclipse-core-resources
(package
(name "java-eclipse-core-resources")
(version "3.11.1")
(version "3.13.200")
(source (origin
(method url-fetch)
(uri (string-append "https://repo1.maven.org/maven2/"
@ -5768,7 +5768,7 @@ the module @code{org.eclipse.ant.core}.")
version "-sources.jar"))
(sha256
(base32
"1hrfxrll6cpcagfksk2na1ypvkcnsp0fk6n3vcsrn97qayf9mx9l"))))
"1sn3b6ky72hkvxcgf9b2jkpbdh3y8lbhi9xxwv1dsiddpkkq91hs"))))
(build-system ant-build-system)
(arguments
`(#:tests? #f ; no tests included
@ -5935,7 +5935,7 @@ and contributes the Eclipse default text editor.")
(define-public java-eclipse-jdt-core
(package
(name "java-eclipse-jdt-core")
(version "3.12.3")
(version "3.16.0")
(source (origin
(method url-fetch)
(uri (string-append "https://repo1.maven.org/maven2/"
@ -5944,11 +5944,28 @@ and contributes the Eclipse default text editor.")
version "-sources.jar"))
(sha256
(base32
"191xw4lc7mjjkprh4ji5vnpjvr5r4zvbpwkriy4bvsjqrz35vh1j"))))
"1g560yr9v2kzv34gc2m3ifpgnj7krcdd6h4gd4z83pwqacwkfz0k"))))
(build-system ant-build-system)
(arguments
`(#:tests? #f ; no tests included
#:jar-name "eclipse-jdt-core.jar"))
#:jar-name "eclipse-jdt-core.jar"
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'move-sources
(lambda _
(with-directory-excursion "src/jdtCompilerAdaptersrc/"
(for-each (lambda (file)
(install-file file (string-append "../" (dirname file))))
(find-files "." ".*")))
(delete-file-recursively "src/jdtCompilerAdaptersrc/")
#t))
(add-before 'build 'copy-resources
(lambda _
(with-directory-excursion "src"
(for-each (lambda (file)
(install-file file (string-append "../build/classes/" (dirname file))))
(find-files "." ".*.(props|properties|rsc)")))
#t)))))
(inputs
`(("java-eclipse-core-contenttype" ,java-eclipse-core-contenttype)
("java-eclipse-core-filesystem" ,java-eclipse-core-filesystem)

164
gnu/packages/linux.scm
View File

@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2013, 2014, 2015, 2016 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2012 Nikita Karetnikov <nikita@karetnikov.org>
;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019 Mark H Weaver <mhw@netris.org>
@ -98,6 +98,7 @@
#:use-module (gnu packages readline)
#:use-module (gnu packages rrdtool)
#:use-module (gnu packages samba)
#:use-module (gnu packages serialization)
#:use-module (gnu packages slang)
#:use-module (gnu packages storage)
#:use-module (gnu packages texinfo)
@ -2486,14 +2487,14 @@ It works with most newer systems.")
(define-public iucode-tool
(package
(name "iucode-tool")
(version "2.2")
(version "2.3.1")
(source (origin
(method url-fetch)
(uri (string-append "https://gitlab.com/iucode-tool/releases"
"/raw/latest/iucode-tool_" version ".tar.xz"))
(sha256
(base32
"0w99k1aq1xw148ffk1xykqf60rdbphb1jknw98jcmadq4pwxl44q"))))
"159gvf6ljgg3g4vlhyy6pyr0wz11rcyhp985vc4az58d9px8xf0j"))))
(build-system gnu-build-system)
(home-page "https://gitlab.com/iucode-tool/iucode-tool/wikis/home")
(synopsis "Manipulate Intel microcode bundles")
@ -2662,7 +2663,22 @@ thanks to the use of namespaces.")
"/singularity-" version ".tar.gz"))
(sha256
(base32
"1whx0hqqi1326scgdxxxa1d94vn95mnq0drid6s8wdp84ni4d3gk"))))
"1whx0hqqi1326scgdxxxa1d94vn95mnq0drid6s8wdp84ni4d3gk"))
(modules '((guix build utils)))
(snippet
'(begin
;; Do not create directories in /var.
(substitute* "Makefile.in"
(("\\$\\(MAKE\\) .*install-data-hook") ""))
;; The original source overrides PATH so that it points to
;; /bin, /usr/local/bin, etc., which obviously doesn't work
;; on Guix System. Leave PATH unchanged so we refer to the
;; installed Coreutils, grep, etc.
(substitute* "bin/singularity.in"
(("^PATH=.*" all)
(string-append "#" all "\n")))
#t))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
@ -2670,12 +2686,6 @@ thanks to the use of namespaces.")
"--localstatedir=/var")
#:phases
(modify-phases %standard-phases
;; Do not create directories in /var.
(add-after 'unpack 'disable-install-hook
(lambda _
(substitute* "Makefile.in"
(("\\$\\(MAKE\\) .*install-data-hook") ""))
#t))
(add-after 'unpack 'patch-reference-to-squashfs-tools
(lambda _
(substitute* "libexec/cli/build.exec"
@ -3251,6 +3261,32 @@ is flexible, efficient and uses a modular implementation.")
write access to exFAT devices.")
(license license:gpl2+)))
(define-public fuseiso
(package
(name "fuseiso")
(version "20070708")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/fuseiso/fuseiso/"
version "/fuseiso-" version ".tar.bz2"))
(sha256
(base32
"127xql52dcdhmh7s5m9xc6q39jdlj3zhbjar1j821kb6gl3jw94b"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))
(inputs
`(("fuse" ,fuse)
("glib" ,glib)
("zlib" ,zlib)))
(home-page "https://sourceforge.net/projects/fuseiso/")
(synopsis "Mount ISO file system images")
(description
"FuseISO is a FUSE module to mount ISO filesystem images (.iso, .nrg,
.bin, .mdf and .img files). It currently support plain ISO9660 Level 1 and 2,
Rock Ridge, Joliet, and zisofs.")
(license license:gpl2)))
(define-public gpm
(package
(name "gpm")
@ -3299,7 +3335,7 @@ and copy/paste text in the console and in xterm.")
(define-public btrfs-progs
(package
(name "btrfs-progs")
(version "4.17.1")
(version "4.20.2")
(source (origin
(method url-fetch)
(uri (string-append "mirror://kernel.org/linux/kernel/"
@ -3307,7 +3343,7 @@ and copy/paste text in the console and in xterm.")
"btrfs-progs-v" version ".tar.xz"))
(sha256
(base32
"0x6d53fbrcmzvhv461575fzsv3373427p4srz646w2wcagqk82xz"))))
"0z0fm3j4ajzsf445381ra8r3zzciyyvfh8vvbjmbyarg2rz8n3w9"))))
(build-system gnu-build-system)
(outputs '("out"
"static")) ; static versions of the binaries in "out"
@ -3402,7 +3438,7 @@ from the btrfs-progs package. It is meant to be used in initrds.")
(method url-fetch)
(uri (string-append
"https://git.kernel.org/cgit/linux/kernel/git/jaegeuk"
"/f2fs-tools.git/snapshot/" name "-" version ".tar.gz"))
"/f2fs-tools.git/snapshot/f2fs-tools-" version ".tar.gz"))
(sha256
(base32
"1m6bn1ibq0p53m0n97il91xqgjgn2pzlz74lb5bfzassx7159m1k"))))
@ -3440,15 +3476,15 @@ disks and SD cards. This package provides the userland utilities.")
(package
(inherit f2fs-tools-1.7)
(name "f2fs-tools")
(version "1.11.0")
(version "1.12.0")
(source (origin
(method url-fetch)
(uri (string-append
"https://git.kernel.org/cgit/linux/kernel/git/jaegeuk"
"/f2fs-tools.git/snapshot/" name "-" version ".tar.gz"))
"/f2fs-tools.git/snapshot/f2fs-tools-" version ".tar.gz"))
(sha256
(base32
"1qvr3hcic1vzfmyl7c0gnjxfsw8zjaadm66y337h49chv9yaq5mr"))))
"15pn2fm9knn7p1vzfzy6msnrdl14p6y1gn4m2ka6ba5bzx6lw4p2"))))
(inputs
`(("libuuid" ,util-linux)))))
@ -3490,21 +3526,16 @@ feature, and a laptop with an accelerometer. It has no effect on SSDs.")
(define-public thinkfan
(package
(name "thinkfan")
(version "0.9.3")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/thinkfan/"
"/thinkfan-" version ".tar.gz"))
(version "1.0.2")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/vmatare/thinkfan.git")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32
"0nz4c48f0i0dljpk5y33c188dnnwg8gz82s4grfl8l64jr4n675n"))
(modules '((guix build utils)))
;; Fix erroneous man page location in Makefile leading to
;; a compilation failure.
(snippet '(begin
(substitute* "CMakeLists.txt"
(("thinkfan\\.1") "src/thinkfan.1"))
#t))))
(base32 "107vw0962hrwva3wra9n3hxlbfzg82ldc10qssv3dspja88g8psr"))))
(build-system cmake-build-system)
(arguments
`(#:modules ((guix build cmake-build-system)
@ -3513,26 +3544,33 @@ feature, and a laptop with an accelerometer. It has no effect on SSDs.")
#:tests? #f ; no test target
#:configure-flags
;; Enable reading temperatures from hard disks via S.M.A.R.T.
;; Upstream ‘defaults to OFF because libatasmart seems to be horribly
;; inefficient’.
`("-DUSE_ATASMART:BOOL=ON")
#:phases
(modify-phases %standard-phases
;; Install scripts for various foreign init systems. Also fix
;; hard-coded path for daemon.
(add-after 'install 'install-rc-scripts
(add-after 'unpack 'create-init-scripts
;; CMakeLists.txt relies on build-time symptoms of OpenRC and
;; systemd to patch and install their service files. Fake their
;; presence rather than duplicating the build system below. Leave
;; things like ‘/bin/kill’ because they're not worth a dependency.
;; The sysvinit needs manual patching, but since upstream doesn't
;; even provide the option to install it: don't.
(lambda* (#:key outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out"))
(files (find-files
(string-append "../thinkfan-" ,version "/rcscripts")
".*")))
(substitute* files
(("/usr/sbin/(\\$NAME|thinkfan)" _ name)
(string-append out "/sbin/" name)))
(for-each (cute install-file <>
(string-append out "/share/thinkfan"))
files))
#t)))))
(let* ((out (assoc-ref outputs "out"))
(share (string-append out "/share/" ,name)))
(substitute* "CMakeLists.txt"
(("pkg_check_modules\\((OPENRC|SYSTEMD) .*" _ package)
(format "option(~a_FOUND \"Faked\" ON)\n" package))
;; That was easy! Now we just need to fix the destinations.
(("/etc" directory)
(string-append out directory)))
#t))))))
(native-inputs
`(("pkg-config" ,pkg-config)))
(inputs
`(("libatasmart" ,libatasmart)))
`(("libatasmart" ,libatasmart)
("yaml-cpp" ,yaml-cpp)))
(home-page "http://thinkfan.sourceforge.net/")
(synopsis "Simple fan control program")
(description
@ -4387,15 +4425,14 @@ re-use code and to avoid re-inventing the wheel.")
(define-public libnftnl
(package
(name "libnftnl")
(version "1.1.1")
(version "1.1.2")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://netfilter.org/libnftnl/"
"libnftnl-" version ".tar.bz2"))
(sha256
(base32
"1wmgjfcb35mscb2srzia5931srygywrs1aznxmg67v177x0nasjx"))))
(base32 "0pffmsv41alsn5ac7mwnb9fh3qpwzqk13jrzn6c5i71wq6kbgix5"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))
@ -5023,7 +5060,7 @@ management tools in userspace.")
(define-public xfsprogs
(package
(name "xfsprogs")
(version "4.19.0")
(version "4.20.0")
(source (origin
(method url-fetch)
(uri (string-append
@ -5031,10 +5068,10 @@ management tools in userspace.")
"xfsprogs-" version ".tar.gz"))
(sha256
(base32
"0gs39yiyamjw516jbak3nj4dy4h2a2g48c1mmv4wbppsccvwmwh5"))))
"0ss0r6jlxxinf9fhpc0fgf7b89n9mzirpa85xxjmi1ix9l6cls6x"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f)) ; Kernel/user integration tests are in package "xfstests"
`(#:tests? #f)) ; kernel/user integration tests are in package "xfstests"
(native-inputs
`(("gettext" ,gettext-minimal)
("util-linux" ,util-linux)))
@ -5049,17 +5086,34 @@ file systems.")
(define-public genext2fs
(package
(name "genext2fs")
(version "1.4.1")
(version "1.4.1-4")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/jeremie-koenig/genext2fs.git")
(commit (string-append "genext2fs-" version))))
;; 1.4.1-3 had a VCS tag but 1.4.1-4 doesn't.
(commit "9ee43894634998b0b2b309d636f25c64314c9421")))
(file-name (git-file-name name version))
(sha256
(base32
"1r0n74pyypv63qfqqpvx75dwijcsvcrvqrlv8sldbhv0nwr1gk53"))))
(base32 "0ib5icn78ciz00zhc1bgdlrwaxvsdz7wnplwblng0jirwi9ml7sq"))))
(build-system gnu-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'apply-debian-patches
;; Debian changes (the revision after ‘-’ in VERSION) are
;; maintained as separate patches. Apply those relevant to us.
(lambda _
(for-each
(lambda (file-name)
(invoke "patch" "-p1" "-i"
(string-append "debian/patches/" file-name)))
(list "blocksize+creator.diff" ; add -B/-o options
"byteswap_fix.diff"))
#t)))))
(native-inputs
`(("autoconf" ,autoconf)
("automake" ,automake)))
(home-page "https://github.com/jeremie-koenig/genext2fs")
(synopsis "Generate ext2 filesystem as a normal user")
(description "This package provides a program to general an ext2

4
gnu/packages/man.scm
View File

@ -241,7 +241,7 @@ automatically.")
(define-public scdoc
(package
(name "scdoc")
(version "1.8.1")
(version "1.9.4")
(source
(origin
(method url-fetch)
@ -250,7 +250,7 @@ automatically.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1f3qrnbjr9ikbdvpsyx726nyiz4f7ka38rimy9fvbl7kmi62w1v7"))))
"00zc3rzj97gscby31djlqyczvqpyhrl66i44czwzmmn7rc5j03m1"))))
(build-system gnu-build-system)
(arguments
`(#:make-flags '("CC=gcc")

4
gnu/packages/maths.scm
View File

@ -1397,7 +1397,7 @@ can solve two kinds of problems:
(define-public octave-cli
(package
(name "octave-cli")
(version "4.4.1")
(version "5.1.0")
(source
(origin
(method url-fetch)
@ -1405,7 +1405,7 @@ can solve two kinds of problems:
version ".tar.lz"))
(sha256
(base32
"0jsdgizlv02an2ppfjwk5qf209zpwi3317yb7jvlsjzxnir3lvhy"))))
"11wwxpy2q1bhxs2v41bqn05i2sb0905cj1xil6mg8l4k2kka4cq6"))))
(build-system gnu-build-system)
(inputs
`(("lapack" ,lapack)

4
gnu/packages/mpd.scm
View File

@ -91,7 +91,7 @@ interfacing MPD in the C, C++ & Objective C languages.")
(define-public mpd
(package
(name "mpd")
(version "0.21.4")
(version "0.21.5")
(source (origin
(method url-fetch)
(uri
@ -100,7 +100,7 @@ interfacing MPD in the C, C++ & Objective C languages.")
"/mpd-" version ".tar.xz"))
(sha256
(base32
"1ix52vfa8k8my4xyr8b0phg8605b2xchyzyva908m08vpzm14w94"))))
"1y8fbch4xp96i4mz6czivnwvaf7g8pnfix5d0pbybnkv7bmz1a9f"))))
(build-system meson-build-system)
(arguments
`(#:configure-flags '("-Ddocumentation=true") ; The default is 'false'...

89
gnu/packages/patches/rust-1.30-gdb-llvm.patch Normal file
View File

@ -0,0 +1,89 @@
Tweak some gdb tests which were broken during LLVM upgrades.
This has been subsequently fixed upstream in later rustc versions,
but still needed to bootstrap some earlier versions of the compiler.
diff -r -u rustc-1.30.1-src-orig/src/test/debuginfo/borrowed-c-style-enum.rs rustc-1.30.1-src/src/test/debuginfo/borrowed-c-style-enum.rs
--- rustc-1.30.1-src-orig/src/test/debuginfo/borrowed-c-style-enum.rs 2019-02-04 12:49:34.055483896 -0800
+++ rustc-1.30.1-src/src/test/debuginfo/borrowed-c-style-enum.rs 2019-02-04 13:01:10.915950356 -0800
@@ -18,15 +18,15 @@
// gdb-command:print *the_a_ref
// gdbg-check:$1 = TheA
-// gdbr-check:$1 = borrowed_c_style_enum::ABC::TheA
+// gdbr-check:$1 = borrowed_c_style_enum::TheA
// gdb-command:print *the_b_ref
// gdbg-check:$2 = TheB
-// gdbr-check:$2 = borrowed_c_style_enum::ABC::TheB
+// gdbr-check:$2 = borrowed_c_style_enum::TheB
// gdb-command:print *the_c_ref
// gdbg-check:$3 = TheC
-// gdbr-check:$3 = borrowed_c_style_enum::ABC::TheC
+// gdbr-check:$3 = borrowed_c_style_enum::TheC
// === LLDB TESTS ==================================================================================
diff -r -u rustc-1.30.1-src-orig/src/test/debuginfo/c-style-enum-in-composite.rs rustc-1.30.1-src/src/test/debuginfo/c-style-enum-in-composite.rs
--- rustc-1.30.1-src-orig/src/test/debuginfo/c-style-enum-in-composite.rs 2019-02-04 12:49:34.051483727 -0800
+++ rustc-1.30.1-src/src/test/debuginfo/c-style-enum-in-composite.rs 2019-02-04 13:02:00.981997525 -0800
@@ -19,31 +19,31 @@
// gdb-command:print tuple_interior_padding
// gdbg-check:$1 = {__0 = 0, __1 = OneHundred}
-// gdbr-check:$1 = (0, c_style_enum_in_composite::AnEnum::OneHundred)
+// gdbr-check:$1 = (0, c_style_enum_in_composite::OneHundred)
// gdb-command:print tuple_padding_at_end
// gdbg-check:$2 = {__0 = {__0 = 1, __1 = OneThousand}, __1 = 2}
-// gdbr-check:$2 = ((1, c_style_enum_in_composite::AnEnum::OneThousand), 2)
+// gdbr-check:$2 = ((1, c_style_enum_in_composite::OneThousand), 2)
// gdb-command:print tuple_different_enums
// gdbg-check:$3 = {__0 = OneThousand, __1 = MountainView, __2 = OneMillion, __3 = Vienna}
-// gdbr-check:$3 = (c_style_enum_in_composite::AnEnum::OneThousand, c_style_enum_in_composite::AnotherEnum::MountainView, c_style_enum_in_composite::AnEnum::OneMillion, c_style_enum_in_composite::AnotherEnum::Vienna)
+// gdbr-check:$3 = (c_style_enum_in_composite::OneThousand, c_style_enum_in_composite::MountainView, c_style_enum_in_composite::OneMillion, c_style_enum_in_composite::Vienna)
// gdb-command:print padded_struct
// gdbg-check:$4 = {a = 3, b = OneMillion, c = 4, d = Toronto, e = 5}
-// gdbr-check:$4 = c_style_enum_in_composite::PaddedStruct {a: 3, b: c_style_enum_in_composite::AnEnum::OneMillion, c: 4, d: c_style_enum_in_composite::AnotherEnum::Toronto, e: 5}
+// gdbr-check:$4 = c_style_enum_in_composite::PaddedStruct {a: 3, b: c_style_enum_in_composite::OneMillion, c: 4, d: c_style_enum_in_composite::Toronto, e: 5}
// gdb-command:print packed_struct
// gdbg-check:$5 = {a = 6, b = OneHundred, c = 7, d = Vienna, e = 8}
-// gdbr-check:$5 = c_style_enum_in_composite::PackedStruct {a: 6, b: c_style_enum_in_composite::AnEnum::OneHundred, c: 7, d: c_style_enum_in_composite::AnotherEnum::Vienna, e: 8}
+// gdbr-check:$5 = c_style_enum_in_composite::PackedStruct {a: 6, b: c_style_enum_in_composite::OneHundred, c: 7, d: c_style_enum_in_composite::Vienna, e: 8}
// gdb-command:print non_padded_struct
// gdbg-check:$6 = {a = OneMillion, b = MountainView, c = OneThousand, d = Toronto}
-// gdbr-check:$6 = c_style_enum_in_composite::NonPaddedStruct {a: c_style_enum_in_composite::AnEnum::OneMillion, b: c_style_enum_in_composite::AnotherEnum::MountainView, c: c_style_enum_in_composite::AnEnum::OneThousand, d: c_style_enum_in_composite::AnotherEnum::Toronto}
+// gdbr-check:$6 = c_style_enum_in_composite::NonPaddedStruct {a: c_style_enum_in_composite::OneMillion, b: c_style_enum_in_composite::MountainView, c: c_style_enum_in_composite::OneThousand, d: c_style_enum_in_composite::Toronto}
// gdb-command:print struct_with_drop
// gdbg-check:$7 = {__0 = {a = OneHundred, b = Vienna}, __1 = 9}
-// gdbr-check:$7 = (c_style_enum_in_composite::StructWithDrop {a: c_style_enum_in_composite::AnEnum::OneHundred, b: c_style_enum_in_composite::AnotherEnum::Vienna}, 9)
+// gdbr-check:$7 = (c_style_enum_in_composite::StructWithDrop {a: c_style_enum_in_composite::OneHundred, b: c_style_enum_in_composite::Vienna}, 9)
// === LLDB TESTS ==================================================================================
diff -r -u rustc-1.30.1-src-orig/src/test/debuginfo/gdb-pretty-struct-and-enums-pre-gdb-7-7.rs rustc-1.30.1-src/src/test/debuginfo/gdb-pretty-struct-and-enums-pre-gdb-7-7.rs
--- rustc-1.30.1-src-orig/src/test/debuginfo/gdb-pretty-struct-and-enums-pre-gdb-7-7.rs 2019-02-04 12:49:34.043483393 -0800
+++ rustc-1.30.1-src/src/test/debuginfo/gdb-pretty-struct-and-enums-pre-gdb-7-7.rs 2019-02-04 13:02:17.954691634 -0800
@@ -27,15 +27,15 @@
// gdb-command: print c_style_enum1
// gdbg-check:$3 = CStyleEnumVar1
-// gdbr-check:$3 = gdb_pretty_struct_and_enums_pre_gdb_7_7::CStyleEnum::CStyleEnumVar1
+// gdbr-check:$3 = gdb_pretty_struct_and_enums_pre_gdb_7_7::CStyleEnumVar1
// gdb-command: print c_style_enum2
// gdbg-check:$4 = CStyleEnumVar2
-// gdbr-check:$4 = gdb_pretty_struct_and_enums_pre_gdb_7_7::CStyleEnum::CStyleEnumVar2
+// gdbr-check:$4 = gdb_pretty_struct_and_enums_pre_gdb_7_7::CStyleEnumVar2
// gdb-command: print c_style_enum3
// gdbg-check:$5 = CStyleEnumVar3
-// gdbr-check:$5 = gdb_pretty_struct_and_enums_pre_gdb_7_7::CStyleEnum::CStyleEnumVar3
+// gdbr-check:$5 = gdb_pretty_struct_and_enums_pre_gdb_7_7::CStyleEnumVar3
#![allow(dead_code, unused_variables)]

26
gnu/packages/perl.scm
View File

@ -1647,9 +1647,8 @@ It returns to the previous working directory when the object is destroyed.")
(lambda* (#:key outputs #:allow-other-keys)
(copy-recursively "."
(string-append (assoc-ref outputs "out")
"/plib/perl5/site_perl/"
,(package-version perl)
"/czplib/"))
"/lib/perl5/site_perl/"
,(package-version perl)))
#t)))))
(home-page "https://sourceforge.net/projects/czplib/")
(synopsis "Library for genomic analysis")
@ -1751,6 +1750,27 @@ their argument and produces a string as its result. The string contains Perl
code that, when \"eval\"ed, produces a deep copy of the original arguments.")
(license (package-license perl))))
(define-public perl-data-dumper
(package
(name "perl-data-dumper")
(version "2.173")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://cpan/authors/id/X/XS/XSAWYERX/"
"Data-Dumper-" version ".tar.gz"))
(sha256
(base32
"1yknbp86md6mjlhbs1lzz6mals3iyizndgiij58qx61hjfrhhxk9"))))
(build-system perl-build-system)
(home-page "https://metacpan.org/release/Data-Dumper")
(synopsis "Convert data structures to strings")
(description "Given a list of scalars or reference variables,
@code{Data::Dumper} writes out their contents in Perl syntax. The references
can also be objects. The content of each variable is output in a single Perl
statement. It handles self-referential structures correctly.")
(license perl-license)))
(define-public perl-data-dumper-concise
(package
(name "perl-data-dumper-concise")

6
gnu/packages/python-xyz.scm
View File

@ -2631,14 +2631,14 @@ Server (PLS).")
(define-public python-language-server
(package
(name "python-language-server")
(version "0.23.2")
(version "0.24.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "python-language-server" version))
(sha256
(base32
"1h83x5widj9p630ha9yv39cpp3djxppll3iww9nc8i3hdmyrbnnh"))))
"05zmv6jr7qbgnkz0lqh5pr7kr4lm12i8ljm2k5h5kz3q9m8d4mm0"))))
(build-system python-build-system)
(propagated-inputs
`(("python-pluggy" ,python-pluggy)
@ -8032,7 +8032,7 @@ python-xdo for newer bindings.)")
`(("python-mock" ,python-mock)
("python-nose" ,python-nose)
("python-pytest" ,python-pytest)))
(home-page "http://www.makotemplates.org/")
(home-page "https://www.makotemplates.org/")
(synopsis "Templating language for Python")
(description "Mako is a templating language for Python that compiles
templates into Python modules.")

166
gnu/packages/ruby.scm
View File

@ -13,6 +13,7 @@
;;; Copyright © 2017, 2018, 2019 Christopher Baines <mail@cbaines.net>
;;; Copyright © 2018 Vasile Dumitrascu <va511e@yahoo.com>
;;; Copyright © 2018 Alex Vong <alexvong1995@gmail.com>
;;; Copyright © 2019 Pierre Neidhardt <mail@ambrevar.xyz>
;;;
;;; This file is part of GNU Guix.
;;;
@ -4982,14 +4983,14 @@ testing libraries to build on.")
(define-public ruby-rack-protection
(package
(name "ruby-rack-protection")
(version "2.0.3")
(version "2.0.5")
(source
(origin
(method url-fetch)
(uri (rubygems-uri "rack-protection" version))
(sha256
(base32
"1z5598qipilmnf45428jnxi63ykrgvnyywa5ckpr52zv2vpd8jdp"))))
"15167q25rmxipqwi6hjqj3i1byi9iwl3xq9b7mdar7qiz39pmjsk"))))
(build-system ruby-build-system)
(arguments
'(;; Tests missing from the gem.
@ -8379,3 +8380,164 @@ uniquely identify it.")
serves JavaScript, CoffeeScript, CSS, LESS, Sass, and SCSS.")
(home-page "https://github.com/rails/sprockets")
(license license:expat)))
(define-public ruby-mustermann
(package
(name "ruby-mustermann")
(version "1.0.3")
(source
(origin
(method url-fetch)
(uri (rubygems-uri "mustermann" version))
(sha256
(base32
"0lycgkmnyy0bf29nnd2zql5a6pcf8sp69g9v4xw0gcfcxgpwp7i1"))))
(build-system ruby-build-system)
(arguments
;; No tests.
'(#:tests? #f))
(synopsis "Library implementing patterns that behave like regular expressions")
(description "Given a string pattern, Mustermann will turn it into an
object that behaves like a regular expression and has comparable performance
characteristics.")
(home-page "https://github.com/sinatra/mustermann")
(license license:expat)))
(define-public ruby-sinatra
(package
(name "ruby-sinatra")
(version "2.0.5")
(source
(origin
(method url-fetch)
(uri (rubygems-uri "sinatra" version))
(sha256
(base32
"1gasgn5f15myv08k10i16p326pchxjsy37pgqfw0xm66kcc5d7ry"))))
(build-system ruby-build-system)
(propagated-inputs
`(("ruby-mustermann" ,ruby-mustermann)
("ruby-rack" ,ruby-rack)
("ruby-rack-protection" ,ruby-rack-protection)
("ruby-tilt" ,ruby-tilt)))
(synopsis "DSL for quick web applications creation in Ruby")
(description
"Sinatra is a DSL for quickly creating web applications in Ruby with
minimal effort.")
(home-page "http://sinatrarb.com/")
(license license:expat)))
(define-public ruby-thin
(package
(name "ruby-thin")
(version "1.7.2")
(source
(origin
(method url-fetch)
(uri (rubygems-uri "thin" version))
(sha256
(base32
"0nagbf9pwy1vg09k6j4xqhbjjzrg5dwzvkn4ffvlj76fsn6vv61f"))))
(build-system ruby-build-system)
(arguments
;; No tests.
'(#:tests? #f))
(propagated-inputs
`(("ruby-daemons" ,ruby-daemons)
("ruby-eventmachine" ,ruby-eventmachine)
("ruby-rack" ,ruby-rack)))
(synopsis "Thin and fast web server for Ruby")
(description "Thin is a Ruby web server that glues together 3 Ruby libraries:
@itemize
@item the Mongrel parser,
@item Event Machine, a network I/O library with high scalability, performance
and stability,
@item Rack, a minimal interface between webservers and Ruby frameworks.
@end itemize\n")
(home-page "http://code.macournoyer.com/thin/")
(license license:ruby)))
(define-public ruby-skinny
(package
(name "ruby-skinny")
(version "0.2.4")
(source
(origin
(method url-fetch)
(uri (rubygems-uri "skinny" version))
(sha256
(base32
"1y3yvx88ylgz4d2s1wskjk5rkmrcr15q3ibzp1q88qwzr5y493a9"))))
(build-system ruby-build-system)
(arguments
'(#:tests? #f ; No included tests
#:phases
(modify-phases %standard-phases
(add-before 'build 'patch-gemspec
(lambda _
(substitute* ".gemspec"
(("<eventmachine>.freeze, \\[\\\"~> 1.0.0\"")
"<eventmachine>, [\">= 1.0.0\"")
(("<thin>.freeze, \\[\\\"< 1.7\", ") "<thin>, ["))
#t)))))
(propagated-inputs
`(("ruby-eventmachine" ,ruby-eventmachine)
("ruby-thin" ,ruby-thin)))
(synopsis "Simple, upgradable WebSockets for Ruby Thin")
(description "Skinny is a simple, upgradable WebSockets for Ruby, using
the Thin library.")
(home-page "https://github.com/sj26/skinny")
(license license:expat)))
(define-public mailcatcher
(package
(name "mailcatcher")
(version "0.7.1")
(source
(origin
(method url-fetch)
(uri (rubygems-uri "mailcatcher" version))
(sha256
(base32
"02w1ycyfv7x0sh9799lz7xa65p5qvl5z4pa8a7prb68h2zwkfq0n"))))
(build-system ruby-build-system)
(arguments
;; Tests require web/assets which is not included in the output. We
;; might be able to fix this by adding the Git repository to the GEM_PATH
;; of the tests. See ruby-mysql2.
'(#:tests? #f
#:phases
(modify-phases %standard-phases
(add-before 'build 'patch-gemspec
(lambda _
(substitute* ".gemspec"
(("<eventmachine>.freeze, \\[\\\"= 1.0.9.1")
"<eventmachine>, [\">= 1.0.9.1")
(("<rack>.freeze, \\[\\\"~> 1.5") "<rack>, [\">= 1.5")
(("<thin>.freeze, \\[\\\"~> 1.5.0") "<thin>, [\">= 1.5.0")
(("<sinatra>.freeze, \\[\\\"~> 1.2") "<sinatra>, [\">= 1.2"))
#t))
(add-before 'build 'loosen-dependency-contraint
(lambda _
(substitute* "lib/mail_catcher.rb"
(("\"eventmachine\", \"1.0.9.1\"") "\"eventmachine\", \">= 1.0.9.1\"")
(("\"rack\", \"~> 1.5\"") "\"rack\", \">= 1.5\"")
(("\"thin\", \"~> 1.5.0\"") "\"thin\", \">= 1.5.0\"")
(("\"sinatra\", \"~> 1.2\"") "\"sinatra\", \">= 1.2\""))
#t)))))
(inputs
`(("ruby-eventmachine" ,ruby-eventmachine)
("ruby-mail" ,ruby-mail)
("ruby-rack" ,ruby-rack)
("ruby-sinatra" ,ruby-sinatra)
("ruby-skinny" ,ruby-skinny)
("ruby-sqlite3" ,ruby-sqlite3)
("ruby-thin" ,ruby-thin)))
(synopsis "SMTP server which catches messages to display them a browser")
(description
"MailCatcher runs a super simple SMTP server which catches any message
sent to it to display in a web interface. Run mailcatcher, set your favourite
app to deliver to smtp://127.0.0.1:1025 instead of your default SMTP server,
then check out http://127.0.0.1:1080 to see the mail.")
(home-page "https://mailcatcher.me")
(license license:expat)))

83
gnu/packages/rust.scm
View File

@ -786,7 +786,7 @@ jemalloc = \"" jemalloc "/lib/libjemalloc_pic.a" "\"
;; The thinlto test should pass with llvm 6.
(delete 'disable-thinlto-test))))))))
(define-public rust
(define-public rust-1.29
(let ((base-rust
(rust-bootstrapped-package rust-1.28 "1.29.2"
"1jb787080z754caa2w3w1amsygs4qlzj9rs1vy64firfmabfg22h"
@ -795,3 +795,84 @@ jemalloc = \"" jemalloc "/lib/libjemalloc_pic.a" "\"
"rust-reproducible-builds.patch"))))
(package
(inherit base-rust))))
(define-public rust-1.30
(let ((base-rust
(rust-bootstrapped-package rust-1.29 "1.30.1"
"0aavdc1lqv0cjzbqwl5n59yd0bqdlhn0zas61ljf38yrvc18k8rn"
#:patches
'("rust-1.25-accept-more-detailed-gdb-lines.patch"
"rust-1.30-gdb-llvm.patch"
"rust-reproducible-builds.patch"))))
(package
(inherit base-rust)
(inputs
;; Use LLVM 7.0
(alist-replace "llvm" (list llvm)
(package-inputs base-rust)))
(arguments
(substitute-keyword-arguments (package-arguments base-rust)
((#:phases phases)
`(modify-phases ,phases
(add-after 'patch-cargo-tests 'patch-cargo-env-shebang
(lambda* (#:key inputs #:allow-other-keys)
(let ((coreutils (assoc-ref inputs "coreutils")))
(substitute* "src/tools/cargo/tests/testsuite/fix.rs"
;; Cargo has a test which explicitly sets a
;; RUSTC_WRAPPER environment variable which points
;; to /usr/bin/env. Since it's not a shebang, it
;; needs to be manually patched
(("\"/usr/bin/env\"")
(string-append "\"" coreutils "/bin/env\"")))
#t)))
(add-after 'patch-cargo-env-shebang 'ignore-cargo-package-tests
(lambda* _
(substitute* "src/tools/cargo/tests/testsuite/package.rs"
;; These tests largely check that cargo outputs warning/error
;; messages as expected. It seems that cargo outputs an
;; absolute path to something in the store instead of the
;; expected relative path (e.g. `[..]`) so we'll ignore
;; these for now
(("fn include") "#[ignore]\nfn include")
(("fn exclude") "#[ignore]\nfn exclude"))
#t))
;; Appears that this test isn't currently running and has been
;; moved elsewhere, so the patch doesn't apply.
(delete 'disable-amd64-avx-test))))))))
(define-public rust
(let ((base-rust
(rust-bootstrapped-package rust-1.30 "1.31.1"
"0sk84ff0cklybcp0jbbxcw7lk7mrm6kb6km5nzd6m64dy0igrlli"
#:patches
'("rust-1.25-accept-more-detailed-gdb-lines.patch"
"rust-1.30-gdb-llvm.patch"
"rust-reproducible-builds.patch"))))
(package
(inherit base-rust)
(arguments
(substitute-keyword-arguments (package-arguments base-rust)
((#:phases phases)
`(modify-phases ,phases
(add-after 'patch-tests 'patch-command-exec-tests
(lambda* (#:key inputs #:allow-other-keys)
(let ((coreutils (assoc-ref inputs "coreutils")))
(substitute* "src/test/run-pass/command-exec.rs"
;; This test suite includes some tests that the stdlib's
;; `Command` execution properly handles situations where
;; the environment or PATH variable are empty, but this
;; fails since we don't have `echo` available in the usual
;; Linux directories.
;; NB: the leading space is so we don't fail a tidy check
;; for trailing whitespace, and the newlines are to ensure
;; we don't exceed the 100 chars tidy check as well
((" Command::new\\(\"echo\"\\)")
(string-append "\nCommand::new(\"" coreutils "/bin/echo\")\n")))
#t)))
(add-after 'patch-tests 'patch-process-docs-rev-cmd
(lambda* _
;; Disable some doc tests which depend on the "rev" command
;; https://github.com/rust-lang/rust/pull/58746
(substitute* "src/libstd/process.rs"
(("```rust") "```rust,no_run"))
#t)))))))))

4
gnu/packages/syncthing.scm
View File

@ -30,7 +30,7 @@
(define-public syncthing
(package
(name "syncthing")
(version "1.0.1")
(version "1.1.0")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/syncthing/syncthing"
@ -38,7 +38,7 @@
"/syncthing-source-v" version ".tar.gz"))
(sha256
(base32
"0gas07lxm5d2c21axgcs90r779rj9sk3jymnnffxz457rvpr2qn3"))
"1iks1a3149gj89yqmqa5iry2ik2sj9sjhlhc6nfh7xq4swqgsrb5"))
;; Since the update to Go 1.11, Go programs have been keeping
;; spurious references to all their dependencies:
;; <https://bugs.gnu.org/33620>.

5
gnu/packages/uml.scm
View File

@ -1,6 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2016 Theodoros Foradis <theodoros@foradis.org>
;;; Copyright © 2019 Arun Isaac <arunisaac@systemreboot.net>
;;; Copyright © 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
;;;
@ -29,14 +30,14 @@
(define-public plantuml
(package
(name "plantuml")
(version "1.2019.0")
(version "1.2019.2")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/plantuml/"
version "/plantuml-" version ".tar.gz"))
(sha256
(base32
"0mws7g0w3fn0wxizccg2iqisq9ljkn95i5qf8ma07lbw3nj0h48n"))))
"0hqj2crf6yg40naiwlnnym4c6r0wbz5vr8729z0daggnyg8vqniz"))))
(build-system ant-build-system)
(arguments
`(#:tests? #f ; no tests

6
gnu/packages/valgrind.scm
View File

@ -35,8 +35,10 @@
(version "3.13.0")
(source (origin
(method url-fetch)
(uri (string-append "ftp://sourceware.org/pub/valgrind/valgrind-"
version ".tar.bz2"))
(uri (list (string-append "http://www.valgrind.org/downloads"
"/valgrind-" version ".tar.bz2")
(string-append "ftp://sourceware.org/pub/valgrind"
"/valgrind-" version ".tar.bz2")))
(sha256
(base32
"0fqc3684grrbxwsic1rc5ryxzxmigzjx9p5vf3lxa37h0gpq0rnp"))

69
gnu/packages/video.scm
View File

@ -33,6 +33,7 @@
;;; Copyright © 2018 Gábor Boskovit <boskovits@gmail.com>
;;; Copyright © 2019 Mathieu Othacehe <m.othacehe@gmail.com>
;;; Copyright © 2019 Timo Eisenmann <eisenmann@fn.de>
;;; Copyright © 2019 Arne Babenhauserheide <arne_bab@web.de>
;;;
;;; This file is part of GNU Guix.
;;;
@ -240,6 +241,43 @@ A/52 standard is used in a variety of applications, including digital
television and DVD. It is also known as AC-3.")
(license license:gpl2+)))
(define-public libaom
;; The 1.0.0-errata1 release installs a broken pkg-config .pc file. This
;; is fixed in libaom commit 0ddc150, but we use an even later commit.
(let ((commit "22b150bf040608028a56d8bf39e72f771383d836")
(revision "0"))
(package
(name "libaom")
(version (git-version "1.0.0-errata1" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://aomedia.googlesource.com/aom/")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"1pdd5h3n42607n6qmggz4yv8izhjr2kl6knb3kh7gh4v0vy47h1r"))))
(build-system cmake-build-system)
(native-inputs
`(("perl" ,perl)
("pkg-config" ,pkg-config)
("python" ,python))) ; to detect the version
(arguments
`(#:tests? #f ;no check target
#:configure-flags
;; build dynamic library
(list "-DBUILD_SHARED_LIBS=YES"
"-DENABLE_PIC=TRUE"
"-DAOM_TARGET_CPU=generic"
(string-append "-DCMAKE_INSTALL_PREFIX="
(assoc-ref %outputs "out")))))
(home-page "https://aomedia.googlesource.com/aom/")
(synopsis "AV1 video codec")
(description "Libaom is the reference implementation of AV1. It includes
a shared library and encoder and decoder command-line executables.")
(license license:bsd-2))))
(define-public libmpeg2
(package
(name "libmpeg2")
@ -707,6 +745,7 @@ standards (MPEG-2, MPEG-4 ASP/H.263, MPEG-4 AVC/H.264, and VC-1/VMW3).")
("opus" ,opus)
("ladspa" ,ladspa)
("lame" ,lame)
("libaom" ,libaom)
("libass" ,libass)
("libbluray" ,libbluray)
("libcaca" ,libcaca)
@ -793,6 +832,7 @@ standards (MPEG-2, MPEG-4 ASP/H.263, MPEG-4 AVC/H.264, and VC-1/VMW3).")
"--enable-fontconfig"
"--enable-gnutls"
"--enable-ladspa"
"--enable-libaom"
"--enable-libass"
"--enable-libbluray"
"--enable-libcaca"
@ -875,7 +915,13 @@ audio/video codec library.")
version ".tar.xz"))
(sha256
(base32
"0b59qk5wpc5ksiha76jbhb859g5gxa4w0k6afh3kgvgajiivs73l"))))))
"0b59qk5wpc5ksiha76jbhb859g5gxa4w0k6afh3kgvgajiivs73l"))))
(arguments
(substitute-keyword-arguments (package-arguments ffmpeg)
((#:configure-flags flags)
`(delete "--enable-libaom" ,flags))))
(inputs (alist-delete "libaom"
(package-inputs ffmpeg)))))
(define-public ffmpeg-for-stepmania
(hidden-package
@ -1366,7 +1412,7 @@ access to mpv's powerful playback capabilities.")
(define-public youtube-dl
(package
(name "youtube-dl")
(version "2019.02.18")
(version "2019.03.01")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/rg3/youtube-dl/releases/"
@ -1374,7 +1420,7 @@ access to mpv's powerful playback capabilities.")
version ".tar.gz"))
(sha256
(base32
"1sr0f6ixpaqyp3cf29zswx84y3nfabwnk3sljcgvgnmjp73zzfv1"))))
"0bxk6adyppdv50jnp5cika8wc6wfgd6d8zbg1njgmcs1pxskllmf"))))
(build-system python-build-system)
(arguments
;; The problem here is that the directory for the man page and completion
@ -1485,7 +1531,7 @@ other site that youtube-dl supports.")
(define-public you-get
(package
(name "you-get")
(version "0.4.1210")
(version "0.4.1256")
(source (origin
(method git-fetch)
(uri (git-reference
@ -1494,7 +1540,7 @@ other site that youtube-dl supports.")
(file-name (git-file-name name version))
(sha256
(base32
"1plw518hzpzzcr38phlnsbpq7aqnps8iwrgr68f6d41rppl1qb25"))))
"1hzr7ha1jvbc0v2bwl7s08ymwdmvb0f2jz4xp1fi6agq5y3ca1iv"))))
(build-system python-build-system)
(inputs
`(("ffmpeg" ,ffmpeg))) ; for multi-part and >=1080p videos
@ -3319,15 +3365,20 @@ transitions, and effects and then export your film to many common formats.")
(define-public dav1d
(package
(name "dav1d")
(version "0.1.0")
(version "0.2.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://downloads.videolan.org/pub/videolan/"
"dav1d/" version "/dav1d-" version ".tar.xz"))
(uri (list ;; The canonical download site
(string-append "https://downloads.videolan.org/pub/videolan/"
"dav1d/" version "/dav1d-" version ".tar.xz")
;; Auto-generated tarballs from the Git repo?
(string-append "https://code.videolan.org/videolan/dav1d/-/"
"archive/" version "/dav1d-" version ".tar.bz2")))
(sha256
(base32
"0dw0liday8cbyrirhm6bgzhxg4cdy66nspfkdlq338gdsfqcvrsc"))))
"0q0dbbl91syjnkygz268gh4b7mdcgl6hldj300a4cbqidsadpl5p"))))
(build-system meson-build-system)
(native-inputs `(("nasm" ,nasm)))
(home-page "https://code.videolan.org/videolan/dav1d")

10
gnu/packages/virtualization.scm
View File

@ -354,7 +354,7 @@ all common programming languages. Vala bindings are also provided.")
(define-public lxc
(package
(name "lxc")
(version "3.0.2")
(version "3.1.0")
(source (origin
(method url-fetch)
(uri (string-append
@ -362,7 +362,7 @@ all common programming languages. Vala bindings are also provided.")
version ".tar.gz"))
(sha256
(base32
"0p1gy553cm4mhwxi85fl6qiwz61rjmvysm8c8pd20qh62xxi3dva"))))
"1igxqgx8q9cp15mcp1y8j564bl85ijw04jcmgb1s5bmfbg1751sd"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))
@ -372,8 +372,10 @@ all common programming languages. Vala bindings are also provided.")
("libseccomp" ,libseccomp)
("libselinux" ,libselinux)))
(arguments
'(#:configure-flags
'("--sysconfdir=/etc"
`(#:configure-flags
(list (string-append "--docdir=" (assoc-ref %outputs "out")
"/share/doc/" ,name "-" ,version)
"--sysconfdir=/etc"
"--localstatedir=/var")
#:phases
(modify-phases %standard-phases

60
gnu/packages/vulkan.scm
View File

@ -32,6 +32,7 @@
#:use-module (gnu packages check)
#:use-module (gnu packages cmake)
#:use-module (gnu packages freedesktop)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gettext)
#:use-module (gnu packages gl)
#:use-module (gnu packages pkg-config)
@ -42,8 +43,8 @@
(define-public spirv-headers
;; Keep updated in accordance with
;; https://github.com/google/shaderc/blob/known-good/known_good.json
(let ((commit "3ce3e49d73b8abbf2ffe33f829f941fb2a40f552")
(revision "3"))
(let ((commit "8bea0a266ac9b718aa0818d9e3a47c0b77c2cb23")
(revision "4"))
(package
(name "spirv-headers")
(version (string-append "0.0-" revision "." (string-take commit 9)))
@ -55,7 +56,7 @@
(commit commit)))
(sha256
(base32
"0yk4bzqifdqpmdxkhvrxbdqhf5ngkga0ig1yyz7khr7rklqfz7wp"))
"01qyjghjz42hmyw9111zz20a1paf37ps39p4xbj8abjba65d8lqx"))
(file-name (string-append name "-" version "-checkout"))))
(build-system cmake-build-system)
(arguments
@ -83,57 +84,56 @@ and for the GLSL.std.450 extended instruction set.
commit "/LICENSE"))))))
(define-public spirv-tools
;; Keep updated in accordance with
;; https://github.com/google/shaderc/blob/known-good/known_good.json
(let ((commit "fe2fbee294a8ad4434f828a8b4d99eafe9aac88c")
(revision "2"))
(package
(name "spirv-tools")
(version (string-append "0.0-" revision "." (string-take commit 9)))
(version "2019.1")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/KhronosGroup/SPIRV-Tools")
(commit commit)))
(commit (string-append "v" version))))
(sha256
(base32
"03rq4ypwqnz34n8ip85n95a3b9rxb34j26azzm3b3invaqchv19x"))
"0vddjzhkrhrm3l3i57nxmq2smv3r1s0ka5ff2kziaahr4hqb479r"))
(file-name (string-append name "-" version "-checkout"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f ; FIXME: Tests fail.
#:phases
(modify-phases %standard-phases
(add-before 'configure 'fixgcc7
(lambda _
(unsetenv "C_INCLUDE_PATH")
(unsetenv "CPLUS_INCLUDE_PATH")
#t)))
#:configure-flags (list (string-append "-DSPIRV-Headers_SOURCE_DIR="
(assoc-ref %build-inputs
"spirv-headers")))))
(assoc-ref %build-inputs "spirv-headers")))))
(inputs `(("spirv-headers" ,spirv-headers)))
(native-inputs `(("pkg-config" ,pkg-config)
(native-inputs `(("gcc" ,gcc-7)
("pkg-config" ,pkg-config)
("python" ,python)))
(home-page "https://github.com/KhronosGroup/SPIRV-Tools")
(synopsis "API and commands for processing SPIR-V modules")
(description
"The SPIR-V Tools project provides an API and commands for processing
SPIR-V modules. The project includes an assembler, binary module parser,
disassembler, validator, and optimizer for SPIR-V.")
(license license:asl2.0))))
SPIR-V modules. The project includes an assembler, binary module
parser,disassembler, validator, and optimizer for SPIR-V.")
(license license:asl2.0)))
(define-public glslang
;; Keep updated in accordance with
;; https://github.com/google/shaderc/blob/known-good/known_good.json
(let ((commit "32d3ec319909fcad0b2b308fe1635198773e8316")
(revision "3"))
(package
(name "glslang")
(version (string-append "3.0-" revision "." (string-take commit 9)))
(version "7.11.3113")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/KhronosGroup/glslang")
(commit commit)))
(commit version)))
(sha256
(base32
"1kmgjv5kbrjy6azpgwnjcn3cj8vg5i8hnyk3m969sc0gq2j1rbjj"))
"1kzv2b4q1fddxd7c0hc754nd6rw6y9vijb9fsi13xzzq9dficgb6"))
(file-name (string-append name "-" version "-checkout"))))
(build-system cmake-build-system)
(arguments
@ -158,7 +158,7 @@ interpretation of the specifications for these languages.")
;; https://www.khronos.org/opengles/sdk/tools/Reference-Compiler/
(license (list license:bsd-3
;; include/SPIRV/{bitutils,hex_float}.h are Apache 2.0.
license:asl2.0)))))
license:asl2.0))))
(define-public vulkan-headers
(package
@ -281,21 +281,19 @@ API.")
(license (list license:asl2.0)))) ;LICENSE.txt
(define-public shaderc
(let ((commit "be8e0879750303a1de09385465d6b20ecb8b380d")
(revision "2"))
(package
(name "shaderc")
(version (git-version "0.0.0" revision commit))
(version "2018.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/google/shaderc")
(commit commit)))
(file-name (string-append name "-" version ".tar.gz"))
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"16p25ry2i4zrj00zihfpf210f8xd7g398ffbw25igvi9mbn4nbfd"))))
"0qigmj0riw43pgjn5f6kpvk72fajssz1lc2aiqib5qvmj9rqq3hl"))))
(build-system meson-build-system)
(arguments
`(#:tests? #f ; FIXME: Tests fail.
@ -349,7 +347,7 @@ API.")
(synopsis "Tools for shader compilation")
(description "Shaderc is a collection of tools, libraries, and tests for
shader compilation.")
(license license:asl2.0))))
(license license:asl2.0)))
(define-public vkd3d
(let ((commit "ecda316ef54d70bf1b3e860755241bb75873e53f")) ; Release 1.1.

46
gnu/packages/wget.scm
View File

@ -1,7 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2012 Nikita Karetnikov <nikita@karetnikov.org>
;;; Copyright © 2014, 2015, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016, 2017, 2019 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com>
;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
@ -111,21 +111,27 @@ online pastebin services.")
(define-public wget2
(package
(name "wget2")
(version "1.0.0")
(version "1.99.1")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://gitlab.com/gnuwget/wget2.git")
(commit "b45709d3d21714135ce79df6abbdcb704684063d")
(commit (string-append name "-" version))
(recursive? #t))) ;; Needed for 'gnulib' git submodule.
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
"0ww84wwzmpyylkz8rnb6nk6f7x040132z81x52w7rjhk68p9mm24"))))
"15wxsnjhc6bzk7f60i1djmsarh1w31gwi5h2gh9k19ncwypfj5dm"))))
(build-system gnu-build-system)
(arguments
`(#:phases (modify-phases %standard-phases
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'skip-network-test
(lambda _
(substitute* "tests/Makefile.am"
(("test-auth-digest\\$\\(EXEEXT)") ""))
#t))
(replace 'bootstrap
(lambda _
;; Make sure all the files are writable so that ./bootstrap
@ -133,26 +139,32 @@ online pastebin services.")
(for-each (lambda (file)
(chmod file #o755))
(find-files "."))
(substitute* "./gnulib/gnulib-tool.py"
(("/usr/bin/python") (which "python3")))
(patch-shebang "./gnulib/gnulib-tool.py")
;; Remove unnecessary inputs from bootstrap.conf
(substitute* "bootstrap.conf"
(("flex.*") "")
(("makeinfo.*") "")
(("lzip.*") "")
(("rsync.*") ""))
(invoke "sh" "./bootstrap"
"--gnulib-srcdir=gnulib"
"--no-git"))))))
(inputs `(("autoconf" ,autoconf)
("automake" ,automake)
("doxygen" ,doxygen)
("flex" ,flex)
("gettext" ,gettext-minimal)
("gnutls" ,gnutls/dane)
(inputs
`(("gnutls" ,gnutls/dane)
("libiconv" ,libiconv)
("libidn2" ,libidn2)
("libmicrohttpd" ,libmicrohttpd)
("libpsl" ,libpsl)
("libtool" ,libtool)
("pcre2" ,pcre2)
("python" ,python)))
("pcre2" ,pcre2)))
;; TODO: Add libbrotlidec, libnghttp2.
(native-inputs `(("pkg-config" ,pkg-config)))
(native-inputs
`(("autoconf" ,autoconf)
("automake" ,automake)
("flex" ,flex)
("gettext" ,gettext-minimal)
("libtool" ,libtool)
("pkg-config" ,pkg-config)
("python" ,python-2)))
(home-page "https://gitlab.com/gnuwget/wget2")
(synopsis "Successor of GNU Wget")
(description "GNU Wget2 is the successor of GNU Wget, a file and recursive

4
gnu/packages/xorg.scm
View File

@ -5663,14 +5663,14 @@ The XCB util-wm module provides the following libraries:
(define-public xinit
(package
(name "xinit")
(version "1.4.0")
(version "1.4.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://xorg/individual/app/xinit-"
version ".tar.bz2"))
(sha256
(base32
"1vw2wlg74ig52naw0cha3pgzcwwk25l834j42cg8m5zmybp3a213"))))
"1fdbakx59vyh474skjydj1bbglpby3y03nl7mxn0z9v8gdhqz6yy"))))
(build-system gnu-build-system)
(inputs
`(("xorgproto" ,xorgproto)